Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq57 102 8e-17 seq2 93.3 4e-14 >seq57 Length=71319 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 || ||||| | ||||| |||||||| ||||||||||| || || || ||| ||| Sbjct 43206 ACTAAATGGAGAGTAGATTCTTTTTGGATATTGTAATCAGACAAGGTACGTCCATCTTCT 43265 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||||| || ||| | || || || || |||||||| || || || ||||| || Sbjct 43266 AATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCCTTATCTTGA 43325 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | ||||| ||| || | || |||||||||| ||| | || || Sbjct 43326 ATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCGAGGGTAATGGTCTTA 43385 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || || || ||||| ||||| Sbjct 43386 CCAGTCAAGGTCTTAACGAAAATTTGCAT 43414 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 || ||||| | || || ||||||||||||||||| || | || | | ||| ||| Sbjct 44118 ACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGATAAAGTTCTACCATCTTCT 44177 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||||| ||||| | || | || || |||||||| || || || ||||| || Sbjct 44178 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCTTGA 44237 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | ||||| ||| || | || |||||||| | ||| | ||||| Sbjct 44238 ATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCAAGGGTAATGGTTTTA 44297 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||||||| |||||||| ||||| Sbjct 44298 CCAGTGAGAGTTTTAACAAAAATTTGCAT 44326 >seq2 Length=160969 Score = 93.3 bits (102), Expect = 4e-14 Identities = 180/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 145720 TCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGTC 145779 || || ||||| || | || | || || ||| | || || ||||||||||| |||||| Sbjct 40051 TCAACAGTGAATTGGATGGCGTCTGCAGCTGGTCTGGTACGGAGATAGTACATACCGGTC 39992 Query 145780 TTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGA---CCGAGTACGTGGGT 145836 ||||| || | ||| | ||||||||| | |||| ||| || | ||||| Sbjct 39991 TTGAGACCCTTTTTCCAGGAGTAAAAGTGCA---TCGATGTGAGTTTGGAAAAGGTGGGC 39935 Query 145837 TCGGCGACAAACAAATTTAGAGAT-TGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGC 145895 || || | ||| | ||| | || | ||||| || ||||| || | | | || |||||||| Sbjct 39934 TCAGCAATAAAGACATTGA-AGCTCTGGCTTTGGTCAATAAAGGCACCACGCTCGGCGGC 39876 Query 145896 CATGTCTATCA-TGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGT 145954 |||||| || | | |||||| ||||||||| | ||||| |||| || |||| | Sbjct 39875 CATGTCAATGAGGGTTCTTTGA-CGAATTTCCCAGACTGTTTTGTAGAGCTCTTTGAGAT 39817 Query 145955 GCTGGGGTATTTCGTCAAT 145973 | ||| ||||| ||||| Sbjct 39816 CGTCGGGGATTTCCTCAAT 39798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475493501062720