Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq57 127 2e-24 seq79 122 8e-23 seq1179 118 1e-21 seq778 107 2e-18 seq2 87.8 2e-12 >seq57 Length=71319 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| || | |||| ||| || || |||||||||||||| || || || Sbjct 43413 ATACCACCTCTGAGTCTAAGAACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 43472 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||||||||| || || | || || ||||| || || || Sbjct 43473 GATAAAGTACGACCATCCTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGT 43532 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||||||||| ||| | ||| | |||||| || || Sbjct 43533 GGGATACCTTCTTTGTCTTGAATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCCTTCT 43592 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| ||||| || || |||||||| |||||||||||||| Sbjct 43593 ACTTCAAGAGTAATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 43642 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| || | |||| ||| || || ||||| ||||| ||||| || || Sbjct 44097 ATACCACCTCTGAGTCTGAGGACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAGTCA 44156 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||| || |||||||| || || | || | || ||| || || || Sbjct 44157 GATAAAGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGT 44216 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| ||||||||||| || |||| ||| | ||| || ||| ||| Sbjct 44217 GGGATACCTTCCTTATCTTGAATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCG 44276 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| ||||| || || |||||||| |||||||||||||| Sbjct 44277 ACTTCAAGGGTAATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 44326 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| || || ||||| |||||||| || ||||| | ||| || ||| || Sbjct 43890 ACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTACCATCTTCT 43949 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| || ||| | || || ||||| || || || ||||| |||||||| |||||| Sbjct 43950 AATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTGA 44009 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| ||| | ||||| || |||||||| ||||||| ||||| Sbjct 44010 ATCTTGGTCTTGACGTTTTCAATAGTGTCTGAGCCTTCGACTTCAAGAGTAATGGTTTTA 44069 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || || || ||||||||||| Sbjct 44070 CCAGTCAAGGTCTTGACGAAAATTTGCAT 44098 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| || || ||||| ||||||||||| ||||| | ||| ||| || Sbjct 43206 ACTAAATGGAGAGTAGATTCTTTTTGGATATTGTAATCAGACAAGGTACGTCCATCTTCT 43265 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| || ||| | || || ||||| || || || || || ||||| ||||||||| Sbjct 43266 AATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCCTTATCTTGA 43325 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| ||| | ||| || ||| ||||||||||| |||| || || Sbjct 43326 ATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCGAGGGTAATGGTCTTA 43385 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || || || ||||||||||| Sbjct 43386 CCAGTCAAGGTCTTAACGAAAATTTGCAT 43414 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || | ||| || | |||| ||| || || |||||||||||||| ||||| || Sbjct 42960 CCACCTCTGAGTCTGAGAACTAAATGGAGGGTAGATTCCTTTTGGATGTTATAGTCAGAT 43019 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | || || |||||||| || || | || || ||||| || || || ||| Sbjct 43020 AAAGTACGACCGTCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCGGGTGGA 43079 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||| |||||||| || |||| ||| | ||| || || |||||| Sbjct 43080 ATACCTTCTTTGTCTTGAATCTTGGTCTTGACGTTTTCGATGGTATCAGAGCCTTCGACT 43139 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| ||||| || || | || || || ||||||||||| Sbjct 43140 TCAAGGGTAATGGTTTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 43186 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| || | |||| ||| || || ||||| |||||||| ||||| || Sbjct 43641 ATACCACCTCTGAGTCTGAGGACTAAATGGAGGGTAGATTCTTTTTGGATGTTATAGTCA 43700 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || || |||||||| || ||| | || | || ||| || || || Sbjct 43701 GATAAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCGGGT 43760 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTT-CTACGGTGTCGGAAGACTC 45289 ||||| |||||||| |||||||| || |||| | || || | | ||| || ||| || Sbjct 43761 GGAATACCTTCTTTGTCTTGAATCTTG-GTTTTAACGTTTTCAATGGTATCAGAACCTTC 43819 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| || || || || | || || || ||||||||||| Sbjct 43820 AACTTCAAGAGTAATGGTCTTACCAGTCAAGGTCTTAACGAAAATTTGCAT 43870 >seq79 Length=61457 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| || | |||| ||| || || ||||| |||||||| || ||||| Sbjct 10296 ATACCACCTCTGAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCA 10355 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| |||||||| || || || | || || ||||| || || || Sbjct 10356 GATAAAGTACGACCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGT 10415 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| ||||||||||| ||| | ||| | |||||| ||| ||| Sbjct 10416 GGAATACCTTCTTTGTCTTGAATTTTAGTTTTAACATTTTCAATGGTGTCTGAACCTTCG 10475 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| ||||| || || | ||||| || ||||||||||| Sbjct 10476 ACTTCAAGAGTAATGGTTTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10525 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || ||||| |||||||| || || || | |||| || ||| || ||||| Sbjct 11006 ATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAGGTTCTACCATCTTCTAATTG 11065 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || || | || || ||||| || || || || || |||||||| ||||||||||| Sbjct 11066 TTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGAATTTT 11125 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | ||| | || || || |||||||| || || | |||||||| || Sbjct 11126 AGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACTTCAAGGGTGATGGTTTTGCCAGT 11185 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || |||||| |||||||||||||| Sbjct 11186 TAAAGTTTTAACAAAAATTTGCAT 11209 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| || || ||||| |||||||| || || || | ||| || ||| || Sbjct 10773 ACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCT 10832 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| || || | || || ||||| || || || || || |||||||| ||||| Sbjct 10833 AATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 10892 Query 45252 ATTTTTTGTTTGATCGCTT-CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || | | || || | | |||||| ||| |||||||| ||||||| || || Sbjct 10893 ATCTTG-GTCTTAACGTTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATAGTCTT 10951 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| || ||||||||||| Sbjct 10952 ACCAGTCAAGGTTTTGACGAAAATTTGCAT 10981 Score = 93.3 bits (102), Expect = 4e-14 Identities = 165/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 45107 TTTTA--TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTA 45164 ||||| |||| || | || || | |||| ||| || || ||||||||||| || ||| Sbjct 10062 TTTTAGTTTCCACCTCTAAGTCTGAGGACTAAATGGAGAGTGGATTCCTTTTGAATGTTA 10121 Query 45165 TAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGG 45224 || || | || | || || |||||||| || ||| | || | || ||| || Sbjct 10122 TAGTCAGATAAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGA 10181 Query 45225 TCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG-CTTCTACGGTGTCGGA 45283 || || || || ||||| |||||||||| | ||||| | | || ||| | ||| || || Sbjct 10182 TCGGGTGGGATACCTTCCTTATCTTGAA-TCTTTGTCTTAACGTTTTCAATGGTATCAGA 10240 Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || |||| || || || || | ||||| || ||||||||||| Sbjct 10241 GCCTTCGACTTCAAGGGTAATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10297 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| || | |||| ||| || || ||||| |||||||| || || || Sbjct 10524 ATACCACCTCTGAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCA 10583 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || || |||||||| || ||| | || | || ||| || || || Sbjct 10584 GATAAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGT 10643 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||||||||| || | ||| | || || || || Sbjct 10644 GGGATACCTTCTTTGTCTTGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCA 10703 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | ||||| || |||| |||||| || ||||||||||| Sbjct 10704 ACTTCAAGGGTGATGGTTTTACCAGTTAAAGTTTTGACGAAAATTTGCAT 10753 >seq1179 Length=2421 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| ||||| || ||||| || | |||| || ||| ||||||||| Sbjct 2405 TGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTACCATCTTCCAATTGT 2346 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | || | || ||| || || || ||||| |||||||||||||||||||| Sbjct 2345 TTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATCTTGAATTTTA 2286 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| | | | || | || |||||| || ||||| || || | ||||| || || Sbjct 2285 -GTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGTTTTACCAGT 2227 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||| || |||||||||||||| Sbjct 2226 CAAAGTCTTGACAAAAATTTGCAT 2203 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| || || ||||| ||||| || || || || | ||| || || ||| Sbjct 2183 ACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTCC 2124 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| ||||| | || || ||||| || || || || || ||||||||||||||| Sbjct 2123 AATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGA 2064 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| |||| || | || | || || || || ||||| || || | ||||| Sbjct 2063 ATTTTAGTCTTGA-CGTTATCAATTGTATCAGAGCCTTCAACTTCAAGGGTGATGGTTTT 2005 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||| ||||| || ||||||||||| Sbjct 2004 ACCAGTTAAGGTTTTAACGAAAATTTGCAT 1975 >seq778 Length=8042 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| || || |||||||| |||||||| || || || | ||| || ||| || Sbjct 4710 ACTAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCT 4769 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| || || | || || ||||| || || || || || |||||||| ||||| Sbjct 4770 AATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 4829 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| ||| | |||||| ||| |||||||||||||| | || || Sbjct 4830 ATCTTGGCCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCGAGAGTGATGGTCTTA 4889 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||| ||||| || || |||||||| Sbjct 4890 CCAGTTAAGGTTTTAACGAAGATTTGCAT 4918 >seq2 Length=160969 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 ||| ||||| | ||| ||||||| || || || | ||| ||||||||||| |||||||| Sbjct 38946 ATTCTCGAAGCCCAAATCGAAACTGGTACCCCATTCATCCTCTACAAAGATGCCTGCAAT 39005 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 ||| ||||||| ||| | || || || | || || |||||| | ||||| Sbjct 39006 TCAAAATCCAATCAACAAAACCTTGGCACCATTTCCAGCAGCAACCTTTGCACAGAAATC 39065 Query 123708 ATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATT 123758 || |||||| | | || |||||||||| || |||||||| || ||| Sbjct 39066 GTCCAATACACCTCGCCAGAGGAAGTGGCCGTTTGCAATTTGGCCTCTATT 39116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451996261750880