Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 239 6e-58 seq697 95.1 1e-14 >seq2 Length=160969 Score = 239 bits (264), Expect = 6e-58 Identities = 1184/1858 (64%), Gaps = 73/1858 (4%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||| |||||||| || |||||||| |||| ||||||| || | ||||| || | Sbjct 40012 CGGAGATAGTACATACCGGTCTTGAGACCCTTTTTCCAGGAGTAAAAGTGCATCGATGTG 39953 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | ||||| | || || | || |||| || | || ||| ||| || || ||| Sbjct 39952 AGTTTGGAAAAGGTGGGCTCAGCAATAAAGACATTGAAGCTCTGGCTTTGGTCAATAAAG 39893 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCACACAGTTCT 115736 || || || || ||||| ||||| | | ||| | |||||||| || ||| | Sbjct 39892 GCACCACGCTCGGCGGCCATGTCAATGAGGGTTCTTTGACGA-ATTTCCCAGACTGTTTT 39834 Query 115737 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTT 115796 |||||| | || | ||| || ||||| ||| | |||| ||||||| ||| | || | Sbjct 39833 GTAGAGCTCTTTGAGATCGTCGGGGATTTCCTCAATATCTTGGATACTGCCTC-TG--TG 39777 Query 115797 GACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCAC 115853 || |||| | | ||| || || ||||| ||||||| || | ||||||| | Sbjct 39776 GAGAATGATTTGGTTCTTGATCTCTGGCGACCATAGACCAAGCTCCATGAGATCGGTGAG 39717 Query 115854 GAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGT 115913 ||| || ||||| |||| || ||||| || | || | || ||||||| Sbjct 39716 GAGTTGTTTATTTACAATGGTGAATTCACCGGCCAACACACGACGACTGTAAATGTTGGA 39657 Query 115914 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 115973 |||||||||||||||||||||||||| || | ||||| | ||| ||| || ||||| Sbjct 39656 TGTGTATGGCTCAAAGCACTCATTGTTTCCGAGAATTTGAGAGGTGCTGGCGGTTGGCAT 39597 Query 115974 GGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTC 116033 || || || | ||| ||||| | ||||| || | || ||||||||| | | Sbjct 39596 TGGGGCAATCAAAAGACTGTTTCTAAGACCGGTGGCCTTGATCTTTTCCTTGAGTTTGGC 39537 Query 116034 CCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGG 116091 |||||| | || ||| | | | | | ||||||| ||| | ||||||||||| | Sbjct 39536 CCAGTCCCAACGTGGAG-ATGGAGTGACAC-CCCACATGTCATATTGGAGGATACCCTTA 39479 Query 116092 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC---GGAG 116148 || ||||| || || ||||| || ||||| | || | | | ||||| || ||| Sbjct 39478 GAGGCTGGTGAGCCTTCAAAGGTTTCATAGGCACCGTGGGCAGCAGCCAACTCATTAGAG 39419 Query 116149 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCC 116208 || ||| || || ||| || || || ||| | ||| | || |||| Sbjct 39418 ---GCTGTGAGAGCGGCAAAATAGATGGTTTCGGCAATCTCACGATTGAGTG---TGGCA 39365 Query 116209 TCGTC---GGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACA 116265 || | || ||||| | | ||| ||||| ||||| ||||||||||||| Sbjct 39364 GCGCCAGTAGAGTCAAAAGGTAAACGAAGGGCGATAAAGACATCGGCGAGACCTTGGATG 39305 Query 116266 CCGAGGCCAATTGGGCGATGTCTCATATTAGA---CTTTCGAGCGGTCTCCACGGGATAA 116322 || || ||||| || | |||||||| || || |||| ||| ||| ||||| Sbjct 39304 CCAAGACCAATGGGTCTGTGTCTCATGTTGGACACCTTTGATTCGG---GCACTGGATAG 39248 Query 116323 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 116382 | || || || || | | | || ||||| ||||||| ||||| || | |||| || Sbjct 39247 TAGTTTCTGTCAATGATCTTGTTGAGATTCTTGGTGATTACCTTGGTTACCTCATAGAGA 39188 Query 116383 TTTTCGTAATCAAA-------ACTGCGAGTCT--------CTTCATT------GACATAC 116421 | || | ||| | || | | | ||| || ||||| Sbjct 39187 TGTTGATGGTCATATTCCTTTTCTTTGGGGTTGGTGGAACCTTGTTTTTGGACAACATAT 39128 Query 116422 TTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT-TATC--AGTGTAC 116478 || || | || || || |||| ||| || || || | | |||| | | ||||| Sbjct 39127 TTGGGCAAAGCAATAGAGGCCAAATTGCAAAC---GGCCACTTCCTCTGGCGAGGTGTAT 39071 Query 116479 TCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 116538 | | ||||| || || | || || ||||||||| | ||| | |||||| || Sbjct 39070 TGGACGATTTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGAT 39011 Query 116539 TTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTG 116598 |||| || || ||||| |||||||| || |||| || || || || |||||| | | Sbjct 39010 TTTGAATTGCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTCG 38951 Query 116599 AGAATAGCCTTCCATACATCGGCGGC-TGGCACAGTGGCGTTGGCTCGCCCCTCCT---- 116653 ||||| || ||| | || ||| | | || || ||||| | || | Sbjct 38950 AGAATGGCAAACCAGAGGTCTTGGGCTTTGATCACACGC-TTGGCAAG-ATCTGGTGTGG 38893 Query 116654 CCTCGTACTTTGTG-TAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGG 116711 | ||||| || | | ||||| ||||||||| | | || ||| | | || || Sbjct 38892 CTTCGTA-TTGGAGATAGAGTTTTCTAAACTCTTC-GCTATGGCACTCGGCCAAGCCAGG 38835 Query 116712 TGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 116771 || | | ||||| ||||| ||||| | | | ||| || | | ||| ||||| Sbjct 38834 GGCTTCGTTGGGACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGAG 38775 Query 116772 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 116831 ||| || |||||| || | ||||| || | | ||| || | || || || Sbjct 38774 GTCACTGACCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTT 38715 Query 116832 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 116891 ||| || | ||| || | ||||| |||||||| || |||| ||| || || | Sbjct 38714 CTTTTTCAAATCGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAA 38655 Query 116892 TGACCCCTTGC---GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCG 116948 | ||||| | | ||| | |||| || || || || || | ||||| || || Sbjct 38654 GGCACCCTTTCTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACG 38595 Query 116949 AAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGC 117008 |||||| || | ||||| | ||| ||| || || || || ||| | || |||| Sbjct 38594 AAGCATGGGGACAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGGC 38535 Query 117009 TCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTC 117068 ||||| | ||| | |||||||| || || || | || ||| | || |||| Sbjct 38534 TCTGATCTTGTGACAGGCGATACCAATGCCACCGGCAGATTTACTGATGAGGGCACACTG 38475 Query 117069 CGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGC 117127 ||||| || | ||||| || || |||||||| |||| |||||| | |||||| || | Sbjct 38474 TTTGAGAGTGTCATAGATACCGTCTATCGAGTCTTCCTTCATTTGC-ACGAGGAAACAAC 38416 Query 117128 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 117187 | ||||| || || | |||||||| | ||| |||||||| || || |||||| | || | Sbjct 38415 TTGACATCTGAGGGTTGGGTGTACCCGAGTTAAAGAGGGTGGGGGTGGCGTGGGTAAAGA 38356 Query 117188 TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATAC 117247 |||| | |||||||||||| | | | | | || || ||||| || | Sbjct 38355 GCTTTTGGCTGAGGAGATCGTAGGTCTCGAGAGCGGCGTCCAAATCGTCGCCGTGGATGC 38296 Query 117248 CGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCT 117307 | | ||||| ||||| ||||||| |||||| || || | |||| || || | Sbjct 38295 CCAACGAGACACGCATTAACATGTGTTGGGGACGCTCAATGATCTGGCCATTGACTCTTT 38236 Query 117308 GGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCTCTT 117365 | | |||||| |||| | ||||||| ||||| | || ||||| | || ||||| Sbjct 38235 GCAAGTAACTTCTCTCGAGTGTCTTGAAGCCAAAGAAATCATAGTCAAAATCTCTCTT 38178 >seq697 Length=10231 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/243 (69%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||||||||||||||| |||||| || || ||||| || ||| ||||| | ||| Sbjct 5931 GTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTCAAACCGGGCATCAAACC 5872 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || ||||| | ||| || || | ||||| ||| ||| ||||| ||||| || Sbjct 5871 ACGTTTCTTGAGCCAAAAGATAGAGCAAAAACTGCCGCTGAAAAAGATACCCTCGACGGC 5812 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 || || |||| || ||| |||||||| || | || || | ||| ||| || Sbjct 5811 GGCAAAGGCAACTAAACGTTCGGCAAATGATTTGCTGTTGGT---GATCCATCTCAATGC 5755 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| | ||||| || | | ||| |||| ||||| ||| || | || |||| |||| Sbjct 5754 CCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGATGGCGTTGAATAGTTTGCTCTT 5695 Query 127771 TTC 127773 ||| Sbjct 5694 TTC 5692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613497782664480