Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq697 100 5e-16 seq2 100 5e-16 >seq697 Length=10231 Score = 100 bits (110), Expect = 5e-16 Identities = 170/243 (70%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 || ||||||| |||||| || |||||||| ||| ||||| |||||| || | | | Sbjct 5945 CAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTCAAA 5886 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAA 160041 || ||||| | ||||| ||||||||||| || | |||||| | ||||| ||||| Sbjct 5885 CCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAG-AGCAAAAACTGCCGCTGAAAAA 5827 Query 160042 GATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATG 160101 ||| ||||| ||||| ||||| || || | | || |||| || ||| ||| Sbjct 5826 GATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGA---TTTGCTGTTGGT 5770 Query 160102 GGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTT 160161 | |||| || ||||| || ||||||||| | || || ||| ||||| |||||| Sbjct 5769 GATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGATGGCGTT 5710 Query 160162 AAA 160164 || Sbjct 5709 GAA 5707 >seq2 Length=160969 Score = 100 bits (110), Expect = 5e-16 Identities = 376/580 (65%), Gaps = 16/580 (3%) Strand=Plus/Minus Query 205124 TTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACCCTCTCCATAAACAGGTCG 205180 |||||||| | || ||||| ||| | ||| || | || || |||||||| ||||| Sbjct 38827 TTGGGACAAAAGAGGGACCA-ATCGG--CGTTTTGCTCGACTCTTTCCATAAAGAGGTCA 38771 Query 205181 CTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTT 205240 |||| ||| ||| ||||||| || || | ||| || ||| | || | || |||||||| Sbjct 38770 CTGACCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTTCTTT 38711 Query 205241 TTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCG 205300 ||||| || | | | ||| ||||||||||| ||||| || | ||||| | || Sbjct 38710 TTCAAATCGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAAGGCA 38651 Query 205301 CCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGC 205360 || |||||| || || ||||| || | | | | || || || || ||| Sbjct 38650 CCCTTTCTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAGC 38591 Query 205361 ATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTC 205420 || || || | |||||||| || ||||| |||| ||| || || || Sbjct 38590 ATGGGGACAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGGCTCTG 38531 Query 205421 ACGTTG-GAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTG 205479 | ||| || | ||| ||||| || || | | | || ||| |||| |||| || Sbjct 38530 ATCTTGTGACA-GGCGATACCAATGCCACCGGCAGATTTACTGATGAGGGCACACTGTTT 38472 Query 205480 CAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGC 205539 |||||| ||||| || | || || || ||| || | ||| || | || | Sbjct 38471 GAGAGTGTCATAGATACCGTCTATCGAGTCTTCCTTCATTTGCACGAGGAAACAACTTGA 38412 Query 205540 CAGCTTGGCAAAGTTG---GTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCG 205596 || || | |||| || |||| || ||||| |||||| |||||||| | ||| | Sbjct 38411 CATCT---GAGGGTTGGGTGTACCCGAGTTAAAGAGGGTGGGGGTGGCGTGGGTAAAGAG 38355 Query 205597 CTTCTCGCTCA-AACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATAC 205655 ||| | ||| | | | | ||||||||| || || |||| |||| |||||| || | Sbjct 38354 CTTTTGGCTGAGGAGATC-GTAGGTCTCGAGAGCGGCGTCCAAATCGTCGCCGTGGATGC 38296 Query 205656 CTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCAT 205695 | | | || | ||| || | |||||| || | ||| || Sbjct 38295 CCAACGAGACACGCATTAACATGTGTTGGGGACGCTCAAT 38256 Score = 84.2 bits (92), Expect = 3e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || ||||| || ||||||| | || || ||| | | ||||||||||| |||||| Sbjct 40051 TCAACAGTGAATTGGATGGCGTCTGCAGCTGGTCTGGTACGGAGATAGTACATACCGGTC 39992 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 || || ||||| | ||| ||| | |||||| || | |||||| | | |||| || Sbjct 39991 TTGAGACCCTTTTTCCAGGAGTAAAAGTGCATCGATGTGAGTTTGGAAAAGGTGGGCTCA 39932 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCAT 204021 || || | || | |||||||||||| || |||||| || || || |||||||| Sbjct 39931 GCAATAAAGACATTGAAGCTCTGGCTTTGGTCAAT-AAAGGCACCACGCTCGGCGGCCAT 39873 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | || | ||| | || ||| ||||| || || ||| Sbjct 39872 GTCAATGAGGGTTCTTTGACGAATTTCCCAGACTGTTTTG 39833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795142994367680