Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq57 122 2e-22 seq778 120 7e-22 seq79 116 9e-21 seq1179 87.8 4e-12 >seq57 Length=71319 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| || || | |||||||| || |||||||||| ||||||||||| ||||| | Sbjct 43425 AGTCTAAGAACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGA 43484 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| |||| || || || || ||||| | ||| || || || || || |||||| Sbjct 43485 CCATCCTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCT 43544 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || ||||| || || || ||| | |||||||| |||||| || | || Sbjct 43545 TTGTCTTGAATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCCTTCTACTTCAAGAGTA 43604 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||||||||| ||||||||||| Sbjct 43605 ATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTG 43639 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| ||||| | || ||||| || || ||||| | |||||||||| ||||| || Sbjct 44109 AGTCTGAGGACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGATAAAGTTCTA 44168 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| | || || || || || || || | || || || || || ||||| Sbjct 44169 CCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCC 44228 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || |||||||| ||| || ||||| ||| || | ||| || || | || Sbjct 44229 TTATCTTGAATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCAAGGGTA 44288 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||||||||| ||||||||||| Sbjct 44289 ATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTG 44323 >seq778 Length=8042 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| || || | |||||| || || || ||||||| ||||||||||| ||||| Sbjct 4697 TCTAAGTCTGAGAACTAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGATAAAGT 4756 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||| | || || ||||| ||||| | ||| || || || || || || Sbjct 4757 TCTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACC 4816 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| ||| ||| ||||| |||||| | ||| || || | Sbjct 4817 TTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCGAG 4876 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || | ||||| || || ||||| Sbjct 4877 AGTGATGGTCTTACCAGTTAAGGTTTTAACGAAGATTTG 4915 >seq79 Length=61457 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| ||||| | || ||||| || || ||||||| ||||||||||| ||||| Sbjct 10760 TCTAAGTCTGAGGACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGT 10819 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||| | || || ||||| || || | ||| || || || || || || Sbjct 10820 TCTACCATCTTCTAATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGGATACC 10879 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| ||| ||| ||| | |||||||| ||| || || | Sbjct 10880 TTCTTTGTCTTGGATCTTGGTCTTAACGTTTTCAATGGTGTCTGAACCTTCGACTTCAAG 10939 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || | ||||| || |||||||| Sbjct 10940 AGTAATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTG 10978 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | || ||||| || || ||||||| ||||||||||| || || || || Sbjct 10994 TCTAAGGACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAGGTTCTACC 11053 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || ||||| ||||| | ||| || || || || || |||||| Sbjct 11054 ATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTT 11113 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| || ||| || ||| | || || | ||| || || | ||||| Sbjct 11114 GTCTTGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACTTCAAGGGTGAT 11173 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || | |||||| ||||||||||| Sbjct 11174 GGTTTTGCCAGTTAAAGTTTTAACAAAAATTTG 11206 Score = 95.1 bits (104), Expect = 3e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| || || | |||||||| || || ||||||| ||||||||||| ||||| | Sbjct 10536 AGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTACGA 10595 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||| | || || |||||||| ||||| | || || || || || |||||| Sbjct 10596 CCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCT 10655 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || ||||| || ||| || ||| | || || | ||| || || | ||| Sbjct 10656 TTGTCTTGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCAACTTCAAGGGTG 10715 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || | |||||| || |||||||| Sbjct 10716 ATGGTTTTACCAGTTAAAGTTTTGACGAAAATTTG 10750 >seq1179 Length=2421 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | || ||||| || || ||||| | ||||||||||| |||||| || || Sbjct 2190 TCTGAGAACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACC 2131 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||| || || || || ||||| | ||| || || || || || |||||| Sbjct 2130 GTCTTCCAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTT 2071 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| || ||| ||| || | || || | ||| || || | ||||| Sbjct 2070 ATCTTGAATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAACTTCAAGGGTGAT 2011 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || | ||||| || |||||||| Sbjct 2010 GGTTTTACCAGTTAAGGTTTTAACGAAAATTTG 1978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178903051142276