Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq79 107 1e-18 seq57 104 2e-17 seq1179 89.7 4e-13 >seq79 Length=61457 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || ||||| | ||| ||||||||| || || ||||| | ||| || |||| Sbjct 10314 AGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGATAAAGTACGACCATCT 10373 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 |||||||| || || |||| |||||||| || ||||| | || | ||||||||||| Sbjct 10374 TCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCT 10433 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||||| | | | ||||||| | ||| || || | |||||| ||| Sbjct 10434 TGAATTTTAGTTTTAACATTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATGGTT 10493 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| ||||| || ||||| Sbjct 10494 TTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10525 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || ||||| | ||| ||||||||| || || || || | ||| | |||| Sbjct 10770 AGGACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCT 10829 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || |||||||| ||| ||||||||||||| || ||||| | || | ||||||||||| Sbjct 10830 TCTAATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCT 10889 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 || || |||| | | | ||||||| | ||| || || | |||||| || Sbjct 10890 TGGATCTTGGTCTTAACGTTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATAGTC 10949 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| ||||| || ||||| Sbjct 10950 TTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10981 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || |||||||| | |||| ||||||||| || || || || | || | |||| Sbjct 10998 AGGACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAGGTTCTACCATCT 11057 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || |||||||| ||| |||| |||||||| || ||||| | || | ||||||||||| Sbjct 11058 TCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCT 11117 Query 39628 CATATTTT-TTGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 ||||| | |||| || || || || || | || ||| || || | || || | Sbjct 11118 TGAATTTTAGTCTTTACATTTTCAATA--GTATCAGAGCCTTCGACTTCAAGGGTGATGG 11175 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || ||||||||||| || || || ||||| Sbjct 11176 TTTTGCCAGTTAAAGTTTTAACAAAAATTTGCAT 11209 >seq57 Length=71319 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || ||||| | ||| ||| ||||| || || || || | ||| || |||| Sbjct 43431 AGAACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGACCATCC 43490 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||||||||| || |||| |||||||| || ||||| | || | ||||||||||| Sbjct 43491 TCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCT 43550 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||||| | | | ||||||| || ||| || || | |||||| ||| Sbjct 43551 TGAATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCCTTCTACTTCAAGAGTAATGGTT 43610 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || | |||||| || || || ||||| Sbjct 43611 TTACCAGTGAGAGTTTTAACAAAAATTTGCAT 43642 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || ||||| | |||| ||||||||| || || ||||| | ||| | |||| Sbjct 43887 AGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTACCATCT 43946 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || |||||||| ||| | ||||||||||| || ||||| | || | ||||||||||| Sbjct 43947 TCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCT 44006 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 || || || | | | | ||||||| || ||| || || | |||||| ||| Sbjct 44007 TGAATCTTGGTCTTGACGTTTTCAATAGTGTCTGAGCCTTCGACTTCAAGAGTAATGGTT 44066 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || ||||| || ||||| Sbjct 44067 TTACCAGTCAAGGTCTTGACGAAAATTTGCAT 44098 >seq1179 Length=2421 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || ||||| | |||| ||||||||| || || || || | |||| | | || Sbjct 2186 AGAACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCT 2127 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||||||||| || |||| |||||||| || ||||| | || | |||||||| || Sbjct 2126 TCCAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCT 2067 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| || | | | | ||| || | || ||| || || | || || ||| Sbjct 2066 TGAATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAACTTCAAGGGTGATGGTT 2007 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| ||||| ||||| || ||||| Sbjct 2006 TTACCAGTTAAGGTTTTAACGAAAATTTGCAT 1975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347364401179724