Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq697 145 8e-30 seq79 102 8e-17 seq57 98.7 1e-15 seq778 84.2 2e-11 >seq697 Length=10231 Score = 145 bits (160), Expect = 8e-30 Identities = 321/477 (67%), Gaps = 7/477 (1%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| ||| || ||||||| ||| || | |||||||| | ||||| ||||| || Sbjct 5953 ACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGA 5894 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | ||||| |||||||| | || ||||| ||||||||||| || | | |||||||| Sbjct 5893 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGAGCAAAAACTGCCGC 5834 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 || |||| ||||||||||| || || || || | || ||| | || | || Sbjct 5833 TGAAAAAGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAA---TGATTTGC 5777 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 || ||| |||||| | || ||||| |||||||| | ||| || || || || || |||| Sbjct 5776 TGTTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGA 5717 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCG 133186 ||||||| || | | || || | | | | |||||||||||| | | Sbjct 5716 TGGCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGAC 5657 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 || | || || || | ||| || ||||| ||||| ||||| || || || | |||| Sbjct 5656 TGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCCT 5597 Query 133247 CGACCACCTGCACTTC-TTGAGCGAAACGCT-CGACCAGATTTTCGTTGACGATGCCGTC 133304 | | || ||||| | | |||| | | | |||||||| ||||| || || || Sbjct 5596 CTGGAATTTGAACTTCACTCA--TAAACTTTGTGGCAAGATTTTCATTGACAATACCATC 5539 Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361 ||||| ||||||||||||| || | ||||||| || ||||| || || || Sbjct 5538 ACTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAA 5482 >seq79 Length=61457 Score = 102 bits (112), Expect = 8e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || |||||||||||| | || || || | | | Sbjct 10753 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 10694 Query 38304 GACAGCGT-GCAAACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | ||| | |||||| ||||| | |||||||| || || || |||| | Sbjct 10693 GATACTATTGAAAATG--TAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATC 10636 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| | ||||||| ||| || ||||| | || |||| || || | ||||||| Sbjct 10635 AACAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACA 10576 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||||| ||| | || || ||||| || || Sbjct 10575 ACATCCAAAAAGAATCTACTCTCCATTTAGTTCT 10542 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| | || ||||||||||||||| | || ||||| | | | Sbjct 11210 AATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAAGGCTC 11151 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 || | | | ||| | |||||| ||||| | |||||||| || || || |||| Sbjct 11150 TGATACTATTGAAAATG--TAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGAT 11093 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | || || ||||| | || || | | ||| | |||||| Sbjct 11092 CAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGACTAC 11033 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| ||| | || || |||||||| || | || ||||| || Sbjct 11032 AACATCCAAAAAGAATCCACTCTTCATTTGGTCCTTAGATTAAGAGGTGG 10983 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || |||||||| || | || ||||| | | Sbjct 10525 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGTTCA 10466 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| ||||| ||||| | |||||||| || ||||| |||| ||| Sbjct 10465 GACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATTCCACCCGATCAA 10406 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || || |||| || | || || | || |||||| Sbjct 10405 CAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTATCTGATTACAAC 10346 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||| ||| | || || ||||| || || Sbjct 10345 ATCCAAAAAGAATCTACTCTCCATTTAGTCCT 10314 >seq57 Length=71319 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || |||||||| || | || || || | | | Sbjct 43642 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACTCTTGAAGTAGAAGGCTCA 43583 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| ||||| ||||| | |||||||| || || || |||| ||| Sbjct 43582 GACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 43523 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || ||||| |||| || | || || | ||||||||| Sbjct 43522 CAACGTTTAATCTTTGCTGGTAAACAATTGGAGGATGGTCGTACTTTATCTGACTACAAC 43463 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||||||| | || || ||||| || || Sbjct 43462 ATCCAAAAGGAATCTACTCTCCATTTAGTTCT 43431 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || |||||||| ||| | || ||||| | | | Sbjct 43186 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACCCTTGAAGTCGAAGGCTCT 43127 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | ||||| | |||| || || | |||||||| || ||||| |||| | Sbjct 43126 GATACCATCGAAAACG--TCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATC 43069 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || | |||| || || ||||| | || |||| || || | ||||| | Sbjct 43068 AACAACGTTTAATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATA 43009 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||||||||| | || || ||||| || || Sbjct 43008 ACATCCAAAAGGAATCTACCCTCCATTTAGTTCT 42975 >seq778 Length=8042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38237 TaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296 ||| || |||||||| ||||| ||||| | || || || |||||||| |||| ||||| Sbjct 4925 TAATAACATGCAAATCTTCGTTAAAACCTTAACTGGTAAGACCATCACTCTCGAAGTCGA 4866 Query 38297 GGCCACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCG 38355 | | |||| | | | ||||| | || | || |||| |||||||| || || || Sbjct 4865 AGGTTCTGACACCATCGAAAACG-TCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCAC 4807 Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 |||| ||||| || | || | || || ||||| | || || | | || | | Sbjct 4806 CCGATCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTG 4747 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||||||||||| ||| | || || || || || || Sbjct 4746 ACTACAACATCCAAAAAGAATCAACCCTCCACTTAGTTCT 4707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500165122347520