Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 307 1e-78 seq171 95.1 2e-14 seq98 93.3 5e-14 seq269 87.8 2e-12 seq697 86.0 8e-12 seq37 82.4 9e-11 >seq2 Length=160969 Score = 307 bits (340), Expect = 1e-78 Identities = 1211/1874 (65%), Gaps = 83/1874 (4%) Strand=Plus/Plus Query 111514 ACATTGACACGAAGAGAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAA 111573 |||||||| |||||||| | |||| || || ||||| ||||||| ||||||| || Sbjct 38167 ACATTGACTACAAGAGAGATTTTGACTATGATTTCTTTGGCTTCAAGACACTCGAGAGAA 38226 Query 111574 GCTACCTCCAAAGACTGGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGG 111633 | ||| | |||||| | |||| | || || || || ||||||| ||||| | Sbjct 38227 GTTACTTGCAAAGAGTCAATGGCCAGATCATTGAGCGTCCCCAACACATGTTAATGCGTG 38286 Query 111634 TCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGT 111693 || || | || ||||| || || ||| | || | | | | ||||| ||||| | Sbjct 38287 TCTCGTTGGGCATCCACGGCGACGATTTGGACGCCGCTCTCGAGACCTACGATCTCCTCA 38346 Query 111694 CCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCC 111753 || | || | |||||| || || |||||||| ||| | |||||||| | || | Sbjct 38347 GCCAAAAGCTCTTTACCCACGCCACCCCCACCCTCTTTAACTCGGGTACACCCAACCCTC 38406 Query 111754 AAATGTCCAGTTGTTTCCTTATTGCAAA-CAAGGAGGATTCAATCAATGGCATTTACGGC 111812 | ||||| |||||||||| | |||||| ||||| || || || | || || || | | Sbjct 38407 AGATGTCAAGTTGTTTCC-TCGTGCAAATGAAGGAAGACTCGATAGACGGTATCTATGAC 38465 Query 111813 ACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGAT-GCACATC-C 111870 ||||||| | ||||||| ||| || | || ||||| || || || || || | Sbjct 38466 ACTCTCAAACAGTGTGCCCTCATCAGTAAATCTGCCGGTGGCATTGGTATCGCCTGTCAC 38525 Query 111871 ATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTA 111930 | || ||||||||| || | ||| | || || || || ||| | |||||| Sbjct 38526 AAGA--TCAGAGCCAGCAGCAGTTATATCCGTGGCACCAACGGCACATCCAACGGTATTG 38583 Query 111931 TTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAA---GCTGGGCGTC 111987 | || |||||||| || ||||| | ||| || | || || ||||| | ||| Sbjct 38584 TCCCCATGCTTCGTGTCTTTAATGACACTGCCAGATACGTCGACCAAGGCGGTGGCAAGA 38643 Query 111988 GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTG 112047 | ||||| | | || ||||| | |||||||||||||| ||||| | ||||| | | Sbjct 38644 GAAAGGGTGCCTTTGCCGTCTACTTGGAGCCATGGCACGCCGATATTTTTGAGTTTATCG 38703 Query 112048 AGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCT 112107 | ||| ||||| || | ||||| | | | | || ||||| | ||| |||| Sbjct 38704 ATTTGAAAAAGAACCACGGCAAAGAGGAAATGAGAGCCAGAGACCTCTTTTACGCCCTCT 38763 Query 112108 GGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTC 112167 || | || ||||| ||| | ||||| ||| | | | | ||||||| |||||||||| Sbjct 38764 GGGTCAGTGACCTCTTTATGGAAAGAGTCGAGCAAAACGCCGATTGGTCCCTCTTTTGTC 38823 Query 112168 CAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTA-CAC 112225 | || | || || || | |||| |||| | | || |||||| | ||||| | | Sbjct 38824 CCAACGAAGCCCCTGGCTTGGCCGAGTGCCAT-AGCGAAGAGTTTAGAAAACTCTATCTC 38882 Query 112226 AAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG-GTGCCAGC--TGCC---GATGTGTG 112279 || ||| |||| | | | ||| | | ||| | | ||| || | || Sbjct 38883 CAA-TAC---GAAGCCACACCAGATCTTGCCAAGCGTGTGATCAAAGCCCAAGACCTCTG 38938 Query 112280 GAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGC 112339 | || |||||| | | |||| ||| |||||||| |||| || || |||||||| || Sbjct 38939 GTTTGCCATTCTCGAAGCCCAAATCGAAACTGGTACCCCATTCATCCTCTACAAAGATGC 38998 Query 112340 CTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTAC 112399 ||| || ||| |||||| | || | || || || |||||| || || Sbjct 38999 CTGCAATTCAAAATCCAATCAACAAAACCTTGGCACCATTTCCAGCAGCAACCTTTGCAC 39058 Query 112400 AGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGC 112459 ||||||| | ||| || ||| || ||| || || || | || || || || Sbjct 39059 AGAAATCGTCCAATACACCTCGCCAGAGGAAGTGGCCGTTTGCAATTTGGCCTCTATTGC 39118 Query 112460 TCTCCCCAAGTATGT-------------GGATCCAGAGAC--------AAAGACATTTGA 112498 | | ||||| ||||| || |||| || |||| || ||| Sbjct 39119 TTTGCCCAAATATGTTGTCCAAAAACAAGGTTCCACCAACCCCAAAGAAAAGGAATATGA 39178 Query 112499 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGA 112558 || || | ||| | || || || || |||| || || || |||| | ||||| Sbjct 39179 CCATCAACATCTCTATGAGGTAACCAAGGTAATCACCAAGAATCTCAACAAGATCATTGA 39238 Query 112559 TAGAAATTTTTACCCCGTTGAGACTG-CTCGTAAA----TCTAATATGAGACACCGTCCA 112613 ||||| | || || || | | | || ||| || || ||||||||| | || Sbjct 39239 CAGAAACTACTATCCAGT---GCCCGAATC--AAAGGTGTCCAACATGAGACACAGACCC 39293 Query 112614 ATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTT 112670 |||||||| || ||||||||||||| ||||| || || ||| || | | ||| Sbjct 39294 ATTGGTCTTGGCATCCAAGGTCTCGCCGATGTCTTTATCGCCCTTCGTTTAC---CTTTT 39350 Query 112671 GA---TTCCGACGAAGCGAAGGAAATCAATGCGCGTATATT--TGAGACAATGTATCACG 112725 || | | | || || | | ||||| || | | ||| || || || ||| | Sbjct 39351 GACTCTACTGGCGCTGCCA---CACTCAAT-CGTG-AGATTGCCGAAACCATCTATTTTG 39405 Query 112726 CCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGG 112785 ||||||| || | |||||||| | | | ||| | |||||||||||||| | Sbjct 39406 CCGCTCTCACAGCCTCTAATGAGTTGGCTGCTGCCCACGGTGCCTATGAAACCTTTGAAG 39465 Query 112786 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGAC-CAAGCTT 112844 | || ||||| || | || | || |||| ||| |||||| |||| || | | || Sbjct 39466 GCTCACCAGCCTCTAAGGGTATCCTCCAATATGACATGTGG---GGTGTCACTCCATCTC 39522 Query 112845 CAC--TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 112902 ||| | ||||||| | ||||||||| ||||||| | |||||| | ||||||| Sbjct 39523 CACGTTGGGACTGGGCCAAACTCAAGGAAAAGATCAAGGCCACCGGTCTTAGAAACAGTC 39582 Query 112903 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 112962 ||||||| || ||||||||||| ||| |||| | ||||| | || || ||||| |||| Sbjct 39583 TTTTGATTGCCCCAATGCCAACCGCCAGCACCTCTCAAATTCTCGGAAACAATGAGTGCT 39642 Query 112963 TTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTG 113022 |||| || ||||| | ||||| || | | | || || || || |||| Sbjct 39643 TTGAGCCATACACATCCAACATTTACAGTCGTCGTGTGTTGGCCGGTGAATTCACCATTG 39702 Query 113023 TCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGT--CCAAGGAT-ATGA 113079 | || || || ||| | || |||| ||| ||||||| |||| ||| ||| | || Sbjct 39703 TAAATAAACAACTCCTCACCGATCTCATGGAGCTTGGTCTATGGTCGCCAGAGATCAAGA 39762 Query 113080 AGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAA 113139 | | |||| | | || || || ||| |||||| ||| || || || || Sbjct 39763 ACCAAATCATTCTCCACAGAGGCAGT---ATCCAAGATATTGAGGAAATCCCCGACGATC 39819 Query 113140 TTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA-TGTCATTGACATGGCC 113198 | || || | ||| ||||| |||||||| | ||| | |||||||||||||| Sbjct 39820 TCAAAGAGCTCTACAAAACAGTCTGGGAAAT-TCGTCAAAGAACCCTCATTGACATGGCC 39878 Query 113199 GCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCA 113258 || || |||||| ||| ||||| ||||| || || | ||| | || || | || Sbjct 39879 GCCGAGCGTGGTGCCTTTATTGACCAAAGCCAGAGCTTCAATGTCTTTATTGCTGAGCCC 39938 Query 113259 ACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGG 113318 || | ||||| ||| | || |||||| | ||| ||||| ||||||||||| || || Sbjct 39939 ACCTTTTCCAAACTCACATCGATGCACTTTTACTCCTGGAAAAAGGGTCTCAAGACCGGT 39998 Query 113319 ATGTATTACCTCCG 113332 ||||| || ||||| Sbjct 39999 ATGTACTATCTCCG 40012 >seq171 Length=42127 Score = 95.1 bits (104), Expect = 2e-14 Identities = 250/371 (67%), Gaps = 13/371 (4%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| | ||| || ||||| | || | ||| | ||||| | ||| || ||||| Sbjct 37520 ATCAAATCTACCGGGACGAAGTAAGGCTTGATCCAAAATATCTGGTCTATTGGTGGCGGC 37461 Query 15947 GATGACAACAATACCTGTTTC-GT-TATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | || || ||| | ||| || || ||||||||||||| || ||| | || || Sbjct 37460 AAACACTAC--TACGTCTTTGAGTGTAGCAAAACCATCCATTTCAACCAACAATTGATTC 37403 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATA-CCACCAGCACTGC--GTTGCT-TTCC 16060 | ||| | ||| | |||||| || ||| || | |||| | ||| ||||| | || Sbjct 37402 AAAGTGTTTTCTCTTTCATCGTT-GCTACCAGAGAAACCACCCTTGCCTCTTGCTCTACC 37344 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 16120 | ||||||||| ||||| || || || || |||||| ||| | ||| |||||| Sbjct 37343 AATGGCATCAATTTCATCGATAAACACAATACATGGTGCATTCTTTTTAGCTTGTTCAAA 37284 Query 16121 GAGATCCCGTACAC--GCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 ||||| ||||| | ||| | || ||||||||| |||| || ||||| | || | Sbjct 37283 TAGATCACGTACTCTAGCT--GGACCTACACCAACATACATTTCAACAAAATCTGATCCA 37226 Query 16179 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 ||| | | ||| || || || | |||||| ||| | ||| || | | ||| ||| Sbjct 37225 GAAGTTGAAAAGAATGGTACGTTTGCTTCACCTGCAGTTGCTTTTGCTAATAAAGTTTTA 37166 Query 16239 CCCGTACCTGG 16249 || |||||||| Sbjct 37165 CCTGTACCTGG 37155 >seq98 Length=57420 Score = 93.3 bits (102), Expect = 5e-14 Identities = 248/377 (66%), Gaps = 13/377 (3%) Strand=Plus/Minus Query 176701 TGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATC 176760 |||||| |||| |||||| | ||| | | ||||| || || || ||||| |||| ||| Sbjct 16114 TGGCCAAAAGTGGTGAATAAAATTAATCAAAAGACCTTTAATATGTGAACCATCGTGATC 16055 Query 176761 GGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGG--AAAC-------ATCTTG 176811 ||| |||||||| | | ||||| ||||| ||| | || |||||| Sbjct 16054 TTGATCAGTCATGATTAATATTTTTCCATAACGAAGTTCGTTTAGACTCTCTTGATCTTG 15995 Query 176812 ATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTG- 176870 ||| ||| ||||| || || | ||| | | || ||||| ||||| ||||| Sbjct 15994 ATAAGTCTTTTTGTGTTGTAGGCCAAGGATGGCTATCAAATTGTTGATCTCTTCGTTTGC 15935 Query 176871 -ATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAG 176929 ||| | | | || || | |||||| |||||| | || ||||| |||||||| Sbjct 15934 CATGAGGGTTTTGGGATTTTG--ATCACGGACATTCAACAATTTACCACGTAGAGGGAAA 15877 Query 176930 ACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAA 176989 ||||| || | | ||||| ||| |||||| || || || | | ||| |||||| Sbjct 15876 ACACCATAACTGTTTCTTCCAACAACACTGAGACCAGCGACAGCCAAAGATTTTGCAGAA 15817 Query 176990 TCACCCTCTGTCACGATGAGTGTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCA 177049 ||||| || || | || || ||||| | | |||| || ||| ||| || ||| Sbjct 15816 TCACCTTCAGTTATAATTAGAGTACAATCACGAGATCTAGCGCCACCGGCCCAATTGGCA 15757 Query 177050 TCATCCAATTTGGGAAT 177066 || || ||||| |||| Sbjct 15756 TCGTCTAATTTATGAAT 15740 >seq269 Length=30927 Score = 87.8 bits (96), Expect = 2e-12 Identities = 217/321 (68%), Gaps = 14/321 (4%) Strand=Plus/Minus Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || ||||||||||| ||||| || || || || |||| ||||| | || ||| | Sbjct 29269 CCGACGGCATCAATTTCATCGATAAATACAATAGCTGGTGCGTTTTCTCTGGCCTCTTTA 29210 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGG 16176 |||||||| | |||||| ||| || ||||| ||||||||||| | || | || | Sbjct 29209 AAGAGATCTCTTACACGACTGGGACCAACACCGACAAACATCTCGATGAAATCTGAACCA 29150 Query 16177 CGGAACATTGGAT-GAAGGGGACATTAGATTCACCCGCAATGG-CTCGGGCGAGAAGAGT 16234 | | |||| || ||| ||||| | ||||| ||| ||| || || | | ||| || Sbjct 29149 CTG---ATTGTATAAAAGTTTACATTGGCCTCACCAGCAGTGGCCTTGGCCAACAAG-GT 29094 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCC 16294 |||||| || ||||| ||| | | || |||||| || ||||| || ||| || Sbjct 29093 CTTACCAGTGCCTGGGGGACCAACCAAGATGGCACCCTTGGGGATCTTTGCACCAAGTCT 29034 Query 16295 AAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCC--AAT-TCATCTTTGGC 16351 |||| |||| || | ||| || || |||| |||| ||| || |||||||| Sbjct 29033 CTTGTATTTCTCTGGATTCTTGAGGAATGAAACAA---ATTCCATAATCTCTTCTTTGGC 28977 Query 16352 GGCGTCAATCCCCTCAACATC 16372 | || || || ||||||| Sbjct 28976 CTCCTCCATACCGGCAACATC 28956 >seq697 Length=10231 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || ||||| || || | | || ||||| || ||||||||||| ||| || Sbjct 5782 TCATTTGCCGAACGTTTAGTTGCCTTTGCCGCCGTCGAGGGTATCTTTTTCAGCGGCAGT 5841 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || ||| |||| | |||||||||||| || ||| | ||||| ||| | ||||| ||| Sbjct 5842 TTTTGCTCTATCTTTTGGCTCAAGAAACGTGGTTTGATGCCCGGTTTGACATTCTCTAAC 5901 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| ||| |||||||||||| |||||| Sbjct 5902 GAGCTCATCAGTCGTGACGAGGGTCTCCAC 5931 >seq37 Length=80241 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 13869 GGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGG 13928 || ||||| || || | | ||||||||||| || || || ||||| || | ||||||| Sbjct 19735 GGCAACATCAATGCCCAACGTGATTGGGGTCATGCCAAAGATTATGTCGAGGGTATGTGG 19794 Query 13929 CTCATGCTTCAACAAGAGGAAGCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCA 13988 |||||| | |||||||| || | || || ||||| | || || ||||| || ||| || Sbjct 19795 CTCATGTTACAACAAGACAAACCAGAAGATTATGTTTTGGCCACCGGTGAAACTCATCCA 19854 Query 13989 GTGAG 13993 || || Sbjct 19855 GTCAG 19859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620732871604160