Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 185 1e-41 seq269 116 4e-21 seq697 87.8 2e-12 seq37 86.0 7e-12 seq41 82.4 9e-11 >seq2 Length=160969 Score = 185 bits (204), Expect = 1e-41 Identities = 1170/1854 (63%), Gaps = 71/1854 (4%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || ||||| |||||||| || |||||||| ||||| | ||| | ||||| || | | Sbjct 40012 CGGAGATAGTACATACCGGTCTTGAGACCCTTTTTCCAGGAGTAAAAGTGCATCGATGTG 39953 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCA-TAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 |||||||||| || || ||| || |||| | || | ||| || || || || Sbjct 39952 AGTTTGGAAAAGGTGGG-CTCAGCAATAAAGACATTGAAGCTCTGGCTTTGGTCAATAAA 39894 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTT 109586 |||||| || || |||||||| |||| |||| | |||||||||||| || || Sbjct 39893 GGCACCACGCTCGGCGGCCATGTCAATGAGGGTTCTTTGACGAATTTCCCAGACTGTTTT 39834 Query 109587 GTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTT 109646 ||| | | |||| ||| ||||| || ||| | || | ||| ||| ||| | | Sbjct 39833 GTAGAGCTCTTTGAGATCGTCGGGGATTTCCTCAATATCTTGGATACTGCCTCTG---TG 39777 Query 109647 CACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAAC 109703 | |||| | | ||| |||||| |||||| ||||| | || |||||||| | Sbjct 39776 GAGAATGATTTGGTTCTTGATCTCTGGCGACCATAGACCAAGCTCCATGAGATCGGTGAG 39717 Query 109704 AAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGT 109763 || || || || || | | |||||||| || | || || ||| ||||| | Sbjct 39716 GAGTTGTTTATTTACAATGGTGAATTCACCGGCCAACACACGACGACTGTAAATGTTGGA 39657 Query 109764 CGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCAT 109823 ||||| || || || ||||||||||| || || ||||| | ||| || || ||||| Sbjct 39656 TGTGTATGGCTCAAAGCACTCATTGTTTCCGAGAATTTGAGAGGTGCTGGCGGTTGGCAT 39597 Query 109824 GGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTC 109883 || || || | ||||||||||| ||||| | | ||| | | || | | | | Sbjct 39596 TGGGGCAATCAAAAGACTGTTTCTAAGACCGGTGGCCTTGATCTTTTCCTTGAGTTTGGC 39537 Query 109884 CCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACC 109943 ||| || |||| | || ||| ||| ||||||| || ||| || | ||| Sbjct 39536 CCAGTCCCAACG---TGGAGATGGAGTGACAC---CCCACATGTCATATTGGAGGATACC 39483 Query 109944 CTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGA 110003 || || || || || || | || | || || | || | | | |||||||| | Sbjct 39482 CTTAGAGGCTGGTGAGCCTTCAAAGGTTTCATAGGCACCGTGGGCAGCAGCCAACTC--A 39425 Query 110004 TGA-AGCCTCT-AGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCA-TGAGGCG 110060 | | || || | || || ||| ||| || || || ||| | | ||| | || ||| Sbjct 39424 TTAGAGGCTGTGAGAGCGGCAAAATAGATGGTTTCGGCAATCTCACGATTGAGTGTGGC- 39366 Query 110061 AGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAAC 110120 || | | |||| || || | || | ||||| ||||| || ||||| || | Sbjct 39365 AGCGCCAGTAGAGTCAAAAGGTAAACGAAGGGCGATAAAGACATCGGCGAGACCTTGGAT 39306 Query 110121 ACCGAGACCAATGGGGCGATGCTTCATGTT--AGAGCGTCGAGCAGTTTC---TACGGGG 110175 || ||||||||||| | || ||||||| | | | | || ||| || || Sbjct 39305 GCCAAGACCAATGGGTCTGTGTCTCATGTTGGACACCTTTGA-----TTCGGGCACTGGA 39251 Query 110176 TAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGG 110235 || |||| | ||| |||| | ||||||||||| || | ||| || | |||| | Sbjct 39250 TAGTAGTTTCTGTCAATGATCTTGTTGAGATTCTTGGTGATTACCTTGGTTACCTCATAG 39191 Query 110236 AGTTTGTCGTAATCGAA--CGTTTTCGT---------------CTCCTTATTG----ACA 110274 || | | | || | | ||||| | || || ||| ||| Sbjct 39190 AGATGTTGATGGTCATATTCCTTTTCTTTGGGGTTGGTGGAACCTTGTTTTTGGACAACA 39131 Query 110275 TATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTAT 110334 |||||||| | ||||||||| || | |||||| || | || ||| ||||||| Sbjct 39130 TATTTGGGCAAAGCAATAGAGGCCAAATTGCAAACGGCCACTTCCTCTGGCGAGGTGTAT 39071 Query 110335 TCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGAT 110394 | | ||||| || || | |||| || |||| || | ||| | ||||| ||| Sbjct 39070 TGGACGATTTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGAT 39011 Query 110395 TTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTG 110454 || || ||||| ||||| || ||||| ||| |||||||||||||||| | || | | | Sbjct 39010 TTTGAATTGCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTCG 38951 Query 110455 AGAATGGCCTTCCATACATCGGCGGCGGGGA-CAGTTGCGTTAGCGAGACC---TTCCTC 110510 |||||||| ||| | || ||| || || || || || ||| | | | Sbjct 38950 AGAATGGCAAACCAGAGGTCTTGGGCTTTGATCACACGC-TTGGCAAGATCTGGTGTGGC 38892 Query 110511 CTCGTACTTGGTGTACAAGTCCTC-AAATTCCTGTCCGT-ACACATCAGAAAGACCCTTC 110568 ||||| |||| | ||| || ||| || | | | ||| || | | || Sbjct 38891 TTCGTA-TTGGAGATAGAGTTTTCTAAACTCTTCGCTATGGCAC-TCGGCCAAGCCAGGG 38834 Query 110569 GCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGG 110628 || | || |||||| ||||||||||||| | | ||| || || | ||| || ||| Sbjct 38833 GCTTCGTTGGGACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGAGG 38774 Query 110629 TCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTG 110688 ||| | ||| | || | || ||||| | | | || || | || ||||| Sbjct 38773 TCACTGACCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTTC 38714 Query 110689 AGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATG 110748 | || | ||| || | ||||| | ||||||||| || | ||||| || | | Sbjct 38713 TTTTTCAAATCGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAAG 38654 Query 110749 GATCCCTTAC---GACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTG 110805 | ||||| | | ||| | |||| || || | || ||| |||| ||||| | Sbjct 38653 GCACCCTTTCTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACGA 38594 Query 110806 AGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACT--TATTGG 110863 ||||| || | ||| || | |||| || || || || | || ||| | ||| Sbjct 38593 AGCATGGGGACAATACCGTTGGATGTGCCGTTGGTGCCACGGAT--ATAACTGCTGCTGG 38536 Query 110864 CACGAATGTCGTGGATATGC-ATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC 110922 | | || | || || | || |||||||| ||||| || | ||||| || | |||||| Sbjct 38535 CTCTGATCTTGT-GACAGGCGATACCAATGCCACCGGCAGATTTACTGATGAGGGCACAC 38477 Query 110923 TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTT-GTTGGCAATTAGAAAGCA 110981 | | |||| || |||| ||||| || ||||| ||| |||| || || | || || || Sbjct 38476 TGTTTGAGAGTGTCATAGATACCGTCTATCGAGTCTTCCTTCATTTGC-ACGAGGAAACA 38418 Query 110982 AGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 | ||||||||||| || || |||| || ||||| || || || || || | || Sbjct 38417 ACTTGACATCTGAGGGTTGGGTGTACCCGAGTTAAAGAGGGTGGGGGTGGCGTGGGTAAA 38358 Query 111042 CAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAAT 111101 || |||| | | ||| || ||||| |||| | | ||| | ||||| || Sbjct 38357 GAGCTTTTGGCTGAGGAGATCGTAGGTCTCGAGAGCGGCGTCCAAATCGTCGCCGTGGAT 38298 Query 111102 ACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACG 111161 || | | || ||||| ||||| | ||| || || || | || |||| || | Sbjct 38297 GCCCAACGAGACACGCATTAACATGTGTTGGGGACGCTCAATGATCTGGCCATTGACTCT 38238 Query 111162 CTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATC 111215 || | |||||| |||| || ||||||| |||||| | || | || ||||| Sbjct 38237 TTGCAAGTAACTTCTCTCGAGTGTCTTGAAGCCAAAGAAATCATAGTCAAAATC 38184 >seq269 Length=30927 Score = 116 bits (128), Expect = 4e-21 Identities = 327/500 (65%), Gaps = 13/500 (3%) Strand=Plus/Minus Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561 |||||| |||||||| || | | || || ||| || | |||| | ||| ||| | Sbjct 29441 ACGATCAAAACGACCGGGTCTCATGAGGGCTGGATCGAGGACATCGGGTCTGTTGGTACC 29382 Query 11562 GGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 ||||| || | || | ||| | ||||||||||||||| | | || || Sbjct 29381 GGCAAACACGATAACGTCAGAGGTTGAGGAGAAACCGTCCATTTCGACCAACAATTGATT 29322 Query 11622 GATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTACCGAC 11681 || || | |||||||||||| ||| || || ||||| ||||| |||||| Sbjct 29321 GAGGGTGTTTTCACGCTCATCATTGT--GGAAT-CCACCACGTGAACGAGCACGACCGAC 29265 Query 11682 AGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAG 11741 || ||||| |||||||| ||||| ||| ||| ||| | | |||| || || || Sbjct 29264 GGCATCAATTTCATCGATAAATACAATAGCTGGTGCGTTTTCTCTGGCCTCTTTAAAGAG 29205 Query 11742 TTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACA 11801 || | |||||| | | |||||||| || |||||||| | ||| | || | || Sbjct 29204 ATCTCTTACACGACTGGGACCAACACCGACAAACATCTCGATGAAATCTGA-----ACCA 29150 Query 11802 CTGAATG-----AAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 |||| || ||| ||||| | ||||||||| |||| || | | |||||| Sbjct 29149 CTGATTGTATAAAAGTTTACATTGGCCTCACCAGCAGTGGCCTTGGCCAACAAGGTCTTA 29090 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 || || || || | |||| | | | ||| || ||||||||| |||||| || | Sbjct 29089 CCAGTGCCTGGGGGACCAACCAAGATGGCACCCTTGGGGATCTTTGCACCAAGTCTCTTG 29030 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976 || ||| || ||||||||||| |||| ||| || || || ||||| || Sbjct 29029 TATTTCTCTGGATTCTTGAGGAATGAAACAAATTCCATAATCTCTTCTTTGGCCTCCTCC 28970 Query 11977 ATACCCTCAACATCGGTGAA 11996 ||||| ||||||| |||| Sbjct 28969 ATACCGGCAACATCCTTGAA 28950 >seq697 Length=10231 Score = 87.8 bits (96), Expect = 2e-12 Identities = 326/506 (64%), Gaps = 9/506 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAG--CAAAGTCCAGGCATGAGTC 119565 || || || || || ||| ||||||||| ||| ||| |||| || ||||| | | Sbjct 5930 TGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTCAAA--CCGGGCATCAAAC 5873 Query 119566 CTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACAC 119625 | | |||||| ||||||||||| | |||||||| || || ||||| ||||| || Sbjct 5872 CACGTTTCTTGAGCCAAAAGATAGAGCAAAAACTGCCGCTGAAAAAGATACCCTCGACGG 5813 Query 119626 AGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCC 119685 ||| || || | || ||| || ||||| | | ||| || ||| | | |||| Sbjct 5812 CGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGCTGTTGGTGATCCATCTCAATGCCC 5753 Query 119686 AGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTT 119745 ||| |||||| | | ||||||| || | |||||| | ||| |||| |||||| Sbjct 5752 AGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGATGGCGTTGAATAGTTTGCTCTTTT 5693 Query 119746 CAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTT 119805 | | | || | || || | || || | | ||||||||| ||| | ||| Sbjct 5692 CCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGACTGTAGGTCTCTGAATGGATGTTTT 5633 Query 119806 CATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTC-GTCAGCA 119864 || || || || |||| || | | ||| || | |||||| ||||| ||| | Sbjct 5632 CAATGGCAATTTGGAAGCCATAGAAACATCTAGCCTCTGGAATTTGAACTTCACTCA-TA 5574 Query 119865 AAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATG 119924 || || || | ||||||| ||||| ||||| ||||||| || || || | Sbjct 5573 AACTTTGTGGCAAGATTTTCATTGACAATACCATCACTGGCAGCGAAAAAGGCCAAAACA 5514 Query 119925 TACTTTATGAATTTCTGTTCATTATCGTTGAGT---GTTTTCCAGTCGTCCATATCTTTA 119981 | |||||| | |||| ||||| || | | | ||||| |||| | |||| Sbjct 5513 TTGGATATGAAATAACGTTCGTTATCATTTAATTTCTTGTTCCAATCGTTGAGATCTGGT 5454 Query 119982 GACAAGTCCACCTCTTCAGCTGTCCA 120007 | ||| || | ||||| |||||||| Sbjct 5453 GCCAAATCAATTTCTTCGGCTGTCCA 5428 >seq37 Length=80241 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 31307 CTCGGGAACATAGAGGCTCGTCGAGATTGGGGTCATGCGAAGGACTACGTGGAGGCCATG 31366 ||||| ||||| | || | || |||||||||||||| || || || || |||| ||| Sbjct 19732 CTCGGCAACATCAATGCCCAACGTGATTGGGGTCATGCCAAAGATTATGTCGAGGGTATG 19791 Query 31367 TGGCTCATGCTTCAACAAGAACGTCCAGATGATTATGTCGTCGCAACAGGTAAATCACAT 31426 ||||||||| | |||||||| ||||| |||||||| | || || ||| || | ||| Sbjct 19792 TGGCTCATGTTACAACAAGACAAACCAGAAGATTATGTTTTGGCCACCGGTGAAACTCAT 19851 Query 31427 TCTGTACGGGAGTTCATAGAAA 31448 | || | ||||| | |||| Sbjct 19852 CCAGTCAGAGAGTTTGTTGAAA 19873 >seq41 Length=78064 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 31307 CTCGGGAACATAGAGGCTCGTCGAGATTGGGGTCATGCGAAGGACTACGTGGAGGCCATG 31366 ||||| ||||| | || | || |||||||| ||||| || ||||| || || | ||| Sbjct 28250 CTCGGCAACATCTATGCCCAACGTGATTGGGGCCATGCCAAAGACTATGTCGAAGGAATG 28191 Query 31367 TGGCTCATGCTTCAACAAGAACGTCCAGATGATTATGTCGTCGCAACAGGTAAATCACAT 31426 ||||||||| | |||||||| ||||| |||||||| | || || ||| || ||||| Sbjct 28190 TGGCTCATGTTACAACAAGACAAACCAGAAGATTATGTTTTGGCCACCGGTGAAACACAT 28131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588966959218400