Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 260 2e-64 seq171 105 8e-18 seq98 104 3e-17 seq269 91.5 2e-13 >seq2 Length=160969 Score = 260 bits (288), Expect = 2e-64 Identities = 1193/1865 (64%), Gaps = 69/1865 (4%) Strand=Plus/Minus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 |||||||||||||| ||||||||||| || | |||||| | ||| | ||||| || | | Sbjct 40012 CGGAGATAGTACATACCGGTCTTGAGACCCTTTTTCCAGGAGTAAAAGTGCATCGATGTG 39953 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 || ||||| | || || | || || | ||| | || || || |||||||| ||| Sbjct 39952 AGTTTGGAAAAGGTGGGCTCAGCAATAAAGACATTGAAGCTCTGGCTTTGGTCAATAAAG 39893 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTGATTTCCCACACTGTGCG 105768 |||||| | || ||||| ||||||| | ||| | |||||||| ||||| Sbjct 39892 GCACCACGCTCGGCGGCCATGTCAATGAGGGTTCTTTGACGA-ATTTCCCAGACTGTTTT 39834 Query 105769 GTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTT 105828 |||||| | |||| ||| || ||||| || |||| ||| || || || | Sbjct 39833 GTAGAGCTCTTTGAGATCGTCGGGGATTTCCTCAATATCTTGGAT---ACTGCCTCTGTG 39777 Query 105829 GACCATGAGATCCTTCAT-ATCCTTGG--ACCAAAGACCAATCTTCTTGAGATCATTGAC 105885 || |||| | ||| | ||| ||| |||| ||||||| || | ||||||| ||| Sbjct 39776 GAGAATGATTTGGTTCTTGATCTCTGGCGACCATAGACCAAGCTCCATGAGATCGGTGAG 39717 Query 105886 GAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGT 105945 ||| || || || ||||| || || || || | | | || ||||| | Sbjct 39716 GAGTTGTTTATTTACAATGGTGAATTCACCGGCCAACACACGACGACTGTAAATGTTGGA 39657 Query 105946 CGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 106005 ||||| || |||||||| ||||| || || | ||||| | |||| ||| |||||||| Sbjct 39656 TGTGTATGGCTCAAAGCACTCATTGTTTCCGAGAATTTGAGAGGTGCTGGCGGTTGGCAT 39597 Query 106006 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATC 106065 ||| || |||||||||||||| | |||||| | ||||||| ||||||||| | Sbjct 39596 TGGGGCAATCAAAAGACTGTTTCTAAGACCGGTGGCCTTGATCTTTTCCTTGAGTTTGGC 39537 Query 106066 CCAGTCGTA--GTTGAGCTTG-GTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTG 106122 |||||| | || ||| | | || |||| |||||| ||| |||| || | || | Sbjct 39536 CCAGTCCCAACGTGGAGATGGAGTGACACC---CCACATGTCATATTGGAGGATACCCTT 39480 Query 106123 GGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 106182 || | || || || ||||| || ||||||| ||| ||||| ||||||| ||| Sbjct 39479 AGAGGCTGGTGAGCCTTCAAAGGTTTCATAGGCACCGTGGGCAGCAGCCAACTCATTAGA 39420 Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242 || || | || ||| |||||||| || | ||| | || | Sbjct 39419 GGCTGTGAGAGCGGCAAAATAGATGGTTTCGGCAATCTCACGATTGAGTGTGGCAGCGCC 39360 Query 106243 ATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAA 106302 | || ||||| | | || ||||| ||||| ||||||||||| | || | Sbjct 39359 AGTAGAGTCAAAAGGTAAACGAAGGGCGATAAAGACATCGGCGAGACCTTGGATGCCAAG 39300 Query 106303 ACCAATAGGTCTGTGTCGCATATTAGAC---TTTCGCGCAGTCTCAACGGGATAAAAATT 106359 |||||| |||||||||| ||| || ||| ||| | | | || ||||| | || Sbjct 39299 ACCAATGGGTCTGTGTCTCATGTTGGACACCTTTGATTCGGGC---ACTGGATAGTAGTT 39243 Query 106360 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 106419 ||||||||||| ||| ||||| ||||| | | ||| || | |||| || | || Sbjct 39242 TCTGTCAATGATCTTGTTGAGATTCTTGGTGATTACCTTGGTTACCTCATAGAGATGTTG 39183 Query 106420 ATAATCAAAA------------------GTGCGAGTCTCTTCATTG----ACATACTTTG 106457 || ||| | ||| || || | ||| ||||| || | Sbjct 39182 ATGGTCATATTCCTTTTCTTTGGGGTTGGTG-GAACCTTGTTTTTGGACAACATATTTGG 39124 Query 106458 GAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAA 106517 | | || || || |||||||||||||| ||| || || ||||| | | | Sbjct 39123 GCAAAGCAATAGAGGCCAAATTGCAAACGGCCACTTCCTCTGGCGAGGTGTATTGGACGA 39064 Query 106518 TTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGT 106577 ||||||| || | |||| || ||| || || | || | ||| || ||| | Sbjct 39063 TTTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGATTTTGAAT 39004 Query 106578 TGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTG 106637 |||| ||||| |||||||| ||| | || || || || || | || | | |||||| | Sbjct 39003 TGCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTCGAGAATGG 38944 Query 106638 CCTTCCACACATCGGCGGCTGGTA-CAATGGCGTTGGCCCGTCCCTCCG---CCTCGTAC 106693 | ||| | || |||| | || || ||||| | | | | ||||| Sbjct 38943 CAAACCAGAGGTCTTGGGCTTTGATCACACGC-TTGGCAAGATCTGGTGTGGCTTCGTA- 38886 Query 106694 TTTGTG-TAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGT 106751 || | | ||||| | |||||| || | | || |||| | || || || | || Sbjct 38885 TTGGAGATAGAGTTTTCTAAACTCTTCGCT-ATGGCACTCGGCCAAGCCAGGGGCTTCGT 38827 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 ||||| || || ||||| | | | ||| || | | ||| || ||||| | Sbjct 38826 TGGGACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGAGGTCACTGA 38767 Query 106812 TCCACAGGGATGAAAAGAGATCTCTA---CACCGAGCCTCTTCGTCACCTTGGTTGAGTC 106868 ||| |||| ||||||| ||||| | | |||||| | || ||||| | Sbjct 38766 CCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTG---CCGTGGTTCTTTT 38710 Query 106869 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 106928 || || | ||||| | ||||| |||||||||||||| | ||||| || | | | Sbjct 38709 TCAAATCGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAAGGCAC 38650 Query 106929 CCTTTCGACGCCCAGC---TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 |||||| ||| | ||| | || || | || ||| | ||||| || ||||||| Sbjct 38649 CCTTTCTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAGCA 38590 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 107045 | || | |||||| | ||| || || || || || ||| | | ||||||| | Sbjct 38589 TGGGGACAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGGCTCTGA 38530 Query 107046 CATCATG-GATGTGC-ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 107103 || || || || || ||||| || || || | || ||| | ||||||| | Sbjct 38529 --TCTTGTGACAGGCGATACCAATGCCACCGGCAGATTTACTGATGAGGGCACACTGTTT 38472 Query 107104 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTT-GTTGGCGATAAGGAAGCAACTGG 107162 ||||| |||||||||||| || ||||| ||||| || || | ||||| ||||| | Sbjct 38471 GAGAGTGTCATAGATACCGTCTATCGAGTCTTCCTTCATTTGC-ACGAGGAAACAACTTG 38413 Query 107163 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 107222 ||||||| || | |||||||| | || |||||||| || || ||||| | || | Sbjct 38412 ACATCTGAGGGTTGGGTGTACCCGAGTTAAAGAGGGTGGGGGTGGCGTGGGTAAAGAGCT 38353 Query 107223 CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 107282 |||| | ||||| ||||| | | | || | || || ||||||||||| | Sbjct 38352 TTTGGCTGAGGAGATCGTAGGTCTCGAGAGCGGCGTCCAAATCGTCGCCGTGGATGCCCA 38293 Query 107283 TGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAA 107342 | |||||||| ||||||| |||||| || |||| ||||| || | ||| | Sbjct 38292 ACGAGACACGCATTAACATGTGTTGGGGACGCTCAATGATCTGGCCATTGACTCTTTGCA 38233 Query 107343 GATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCGCTTCGTA- 107401 || || |||| || || |||| |||||| || || | ||| | || | ||| ||| Sbjct 38232 AGTAACTTCTCTCGAGTGTCTTGAAGCCAAAGAAATCATAGTCAAAATCTCTCTT-GTAG 38174 Query 107402 TCAAT 107406 ||||| Sbjct 38173 TCAAT 38169 >seq171 Length=42127 Score = 105 bits (116), Expect = 8e-18 Identities = 249/369 (67%), Gaps = 9/369 (2%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | ||| |||||||| | || | ||| | ||||| | ||| || ||||| Sbjct 37520 ATCAAATCTACCGGGACGAAGTAAGGCTTGATCCAAAATATCTGGTCTATTGGTGGCGGC 37461 Query 9254 GATGACAACAATACCTGTTTCATTAT--CAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || || ||| | ||| | | | ||||||||||||| || ||| | ||| || Sbjct 37460 AAACACTAC--TACGTCTTTGAGTGTAGCAAAACCATCCATTTCAACCAACAATTGATTC 37403 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA-CCAGCACTGCGT--TGCTTTCCC 9368 | ||| | ||| | |||||| || ||| || | | ||| | ||| | |||| | || Sbjct 37402 AAAGTGTTTTCTCTTTCATCGTT-GCTACCAGAGAAACCACCCTTGCCTCTTGCTCTACC 37344 Query 9369 AC-GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 | ||||||||| ||||| || || |||||||||||| ||| | || |||||| Sbjct 37343 AATGGCATCAATTTCATCGATAAACACAATACATGGTGCATTCTTTTTAGCTTGTTCAAA 37284 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 ||||| || || || | || ||||||||| |||| || ||||| | || | || Sbjct 37283 TAGATCACGTACTCTAGCTGGACCTACACCAACATACATTTCAACAAAATCTGATCCAGA 37224 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 | | | ||| || || || | |||||| ||| | ||| || | | ||| ||||| Sbjct 37223 AGTTGAAAAGAATGGTACGTTTGCTTCACCTGCAGTTGCTTTTGCTAATAAAGTTTTACC 37164 Query 9548 CGTACCTGG 9556 |||||||| Sbjct 37163 TGTACCTGG 37155 >seq98 Length=57420 Score = 104 bits (114), Expect = 3e-17 Identities = 274/418 (66%), Gaps = 8/418 (2%) Strand=Plus/Minus Query 168296 ACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAGTCTGG 168355 ||| |||||||| | ||||| || | |||||||| || |||| | || || || || Sbjct 16978 ACCAATACCTTCAGAGCCATTGACCAATACCATTGGAATAATTGGAACATAGAATTCCGG 16919 Query 168356 TTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGATC--- 168412 | ||| || || || ||||||||||| | || || ||||| | || Sbjct 16918 CTGAATGCTATCACCTTCCTCTTCCAAGTAGTTTAAGAGAGGATCATCGAGTTCATTGTA 16859 Query 168413 -AAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAGAAGCAT 168471 ||| ||| ||| |||| | || |||||||||||||| || | || || Sbjct 16858 TAAATGTCTAACGACACTCTCT----AGCTTTGTGAAAATGTATCTTGGGCTAGCGCAAT 16803 Query 168472 CCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTTGT 168531 | |||||| ||||| |||||||||||||||| | | | || |||||| | Sbjct 16802 CTGAACCACCTTGAAGACGAGTACCAAATTGACCACCGGCATATAATAGTGGAATGTTAT 16743 Query 168532 TTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTCACCAT 168591 |||| || ||| | ||||| ||| ||||| || | | ||| ||||||||| Sbjct 16742 TTGATCCAACATAGCTTTGTGCCATCTTTACAATTGTAGCATTGAGGGAAGCTTCACCAT 16683 Query 168592 GGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATCCT 168651 |||| || |||| | || || ||||| | | || ||| || || || |||||| Sbjct 16682 GGTGATAGGCAGTATGTTCAGCAACATAACCAGACAATTGAGCAACTTTAATTTCAGAGG 16623 Query 168652 TGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCATC 168709 | || || | | |||||| ||||||| | ||| || || |||||||||||||| Sbjct 16622 TTAGCTTTCTCTTGAAGCATGCATACAATATTTTTCTTTGGCCTGGCTTGAGACCATC 16565 >seq269 Length=30927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 218/321 (68%), Gaps = 14/321 (4%) Strand=Plus/Minus Query 9366 CCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 9425 || ||||||||||| ||||| || || |||||| |||| ||||| | ||| || | Sbjct 29269 CCGACGGCATCAATTTCATCGATAAATACAATAGCTGGTGCGTTTTCTCTGGCCTCTTTA 29210 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGG 9483 |||||||| | || | ||| || ||||| ||||||||||| | || | || | Sbjct 29209 AAGAGATCTCTTACACGACTGGGACCAACACCGACAAACATCTCGATGAAATCTGAACCA 29150 Query 9484 CGGAACATTGGAT-GAAGGGGACATTAGATTCACCCGCAATGG-CTCGGGCGAGAAGAGT 9541 | | |||| || ||| ||||| | ||||| ||| ||| || || | | ||| || Sbjct 29149 CTG---ATTGTATAAAAGTTTACATTGGCCTCACCAGCAGTGGCCTTGGCCAACAAG-GT 29094 Query 9542 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCC 9601 |||||| || ||||| ||| | | || ||||||| || ||||| || ||| || Sbjct 29093 CTTACCAGTGCCTGGGGGACCAACCAAGATGGCACCCTTGGGGATCTTTGCACCAAGTCT 29034 Query 9602 AAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCC--AAT-TCATCTTTGGC 9658 |||| |||| || | |||||| || |||| |||| ||| || |||||||| Sbjct 29033 CTTGTATTTCTCTGGATTCTTGAGGAATGAAACAA---ATTCCATAATCTCTTCTTTGGC 28977 Query 9659 GGCGTCAATCCCCTCAACATC 9679 | || || || ||||||| Sbjct 28976 CTCCTCCATACCGGCAACATC 28956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589971743794720