Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq434 89.7 6e-13 >seq434 Length=20736 Score = 89.7 bits (98), Expect = 6e-13 Identities = 198/295 (67%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 153732 GGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 153791 ||||| ||||| ||||||||| | |||| ||||| |||||| | || | || Sbjct 4146 GGTGAATGGGGTGCCGATATTGCTCTCGGTAACTCTCAAAGATTTGGTGTACCCCTTGGT 4205 Query 153792 TATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 153851 | ||| ||||| || || || |||||||| || | ||||| || | | | || Sbjct 4206 TTTGGTGGTCCACACGCCGCCTTCTTTGCCACCAGCGACAAATACAGTCGTTTACTTCCC 4265 Query 153852 GGCAGAATTGTAGGTCAGTCAGTA--GATAGTGAAGGTAATAAAGCATACAGATTAGCAC 153909 |||||||| | ||| ||||| | || | |||| ||| || ||| | | || | Sbjct 4266 GGCAGAATCATTGGT--GTCAGCAAAGACAAGCAAGGCAATCTTGCCTACCGTATGGCCC 4323 Query 153910 TACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTC 153969 | || ||| | || || || || | | || || || ||||||||||| ||||| ||| Sbjct 4324 TCCAAACTCGTGAACAACACATTCGTCGTGAAAAGGCCACCAGTAACATTTGCACCTCTC 4383 Query 153970 AGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGG 154024 | || || |||| || ||| ||| | ||||| | ||||||||| |||| || Sbjct 4384 AAGCCCTTTTGGCCAACATGGCTGCCATGTATGCCGTCTATCATGGTCCAGAAGG 4438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579203909083520