Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq434 147 3e-30 >seq434 Length=20736 Score = 147 bits (162), Expect = 3e-30 Identities = 360/538 (67%), Gaps = 22/538 (4%) Strand=Plus/Plus Query 159274 GATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTAT 159333 || ||||| || |||| || || |||||||| ||||| || || || ||||||||| Sbjct 5064 GAAATCACTGGTTTTGCCGCTTGCTCCTTACAACCAAACGCTGGTTCCCAAGGTGAGTAT 5123 Query 159334 GCAGGACTGTTAGCAATCCAAGCATACCATCA--AGGATCAGGAGATGATAAAAGAAATG 159391 ||||| || | | || | || || | ||| || | ||| | | ||||||| Sbjct 5124 GCAGGTTTGATGGTCATTCGTGCCTATC-TCATTAGCAA-AGGTCAAGCACAAAGAAACA 5181 Query 159392 TATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGA 159451 | |||||||| |||| || || || || || ||||| || || || || ||||| || | Sbjct 5182 TTTGTTTGATTCCAGTCTCTGCCCACGGTACCAATCCAGCTTCTGCTGTTATGGCCGGTA 5241 Query 159452 TGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAA--GATCTAG- 159508 || ||||||| | |||||| || || | |||| || | || |||| ||| || Sbjct 5242 TGCAAGTTGTCGTTGTCAATTGCGACGCCAATGGTAATGTCGA--TCAAGCCGATTTACG 5299 Query 159509 ------AGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATC 159562 || |||| ||| ||| ||| || | | | | | |||||| || |||| Sbjct 5300 TGCCAAAGCTGAAAAGTATCGTGA-TACTTTGG--CCGCCCT----TATGATCACCTATC 5352 Query 159563 CATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGA 159622 ||||||| || ||||| || ||| | | || | | || || | | | || | Sbjct 5353 CATCTACCCACGGTGTTTTCGAAGAAGGCGCCAAAGAAATGTGCGAACTCATCCACCAAT 5412 Query 159623 ATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAAC 159682 | |||||||| || ||| | |||||||| ||| | ||||| || || ||||| | Sbjct 5413 ACGGTGGTCAAGTCTATATGGATGGTGCCAATATGAATGCTCAAGTTGGTCTCTGTCGTC 5472 Query 159683 CATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCAC 159742 || ||||| |||||| ||||| || || | || | || ||||| ||||||||||||| Sbjct 5473 CAGGTGACATTGGTGCCGATGTTTGCCACTTGAATCTCCACAAGACTTTCTGTATTCCAC 5532 Query 159743 ATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATT 159800 | || ||||| ||||| || | ||||| ||| | || || ||||| | ||||| Sbjct 5533 ACGGTGGTGGTGGTCCAGGTATGGGTCCAATTTGCGTTGCCTCTCATCTTGCCCCATT 5590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588042173414080