Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1179 91.5 1e-13 >seq1179 Length=2421 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| |||||| |||||||||||||| || | | ||| |||| ||| Sbjct 2411 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTACCATCTTCC 2352 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||||| || ||||| || |||| ||| || || | || | || || || || | Sbjct 2351 AATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATCTTGA 2292 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATT-CACCGG---CCTCAACATCGACGGTTATGGT 34948 || || ||| || || |||| ||| | ||| | ||||| || | ||| || || Sbjct 2291 ATTTTAGTTTTAAC--AT--TATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGT 2236 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || || | |||||| ||||| || |||||| Sbjct 2235 TTTACCAGTCAAAGTCTTGACAAAAATTTGCATA 2202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324628741452384