Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq16 109 7e-19 seq329 96.9 5e-15 >seq16 Length=97561 Score = 109 bits (120), Expect = 7e-19 Identities = 243/365 (67%), Gaps = 0/365 (0%) Strand=Plus/Plus Query 19228 CCTTTTATTGATACATCAATAAATGCAATTTGGAATGATTGGCAACATTATCCCAACGGC 19287 |||||||||||| ||| | ||||| |||| |||||||||||||||||| | || Sbjct 8216 CCTTTTATTGATGTATCTGTGAATGCCGAATGGAGTGATTGGCAACATTATCCAGATGGT 8275 Query 19288 AGACCAAATTATTTATATTCCAAACAAGCTGTTGAATGGAATGCTGATGGTTTAGTATTT 19347 ||||||||| | ||||| |||||| |||| | ||| |||||||||||| ||| Sbjct 8276 AGACCAAATCCAATTTATTCTCAACAAGTCATTGATTATAATCTTGATGGTTTAGTCTTT 8335 Query 19348 GGATTTATTACATTATCTGCTAAAGGTAAGGCTTGTTGGGCTGCTCAAGATACTATGCCA 19407 || || ||||| ||||| | | | ||||| |||||||||||| | ||||| Sbjct 8336 GGTTTCATTACTCTATCTACATCAAACACTGCTTGCTGGGCTGCTCAACCCAAAATGCCT 8395 Query 19408 TTAGACTGGTCTTTACCTTTGGCCAAAGAACTTACTTTATCCGGTAAAGAGACAATTATT 19467 | | ||| || | || ||||| | || | ||| |||| | ||| | Sbjct 8396 CTCAATTGGGCTCTTCCATTGGCTCAGGATATCCAAAAGTCCAATAAAAAAGTAATCGTA 8455 Query 19468 TCATTTGGTGGAGCAAGTAACCCAGATATTTCATATAAATTTTCCATTGATGAATTGGTT 19527 ||||||||||| ||| || ||||||| | |||| | ||||| ||||||| Sbjct 8456 TCATTTGGTGGTGCATCAAATAGAGATATTAGCACTCAATTCACTGTTGATCAATTGGTA 8515 Query 19528 CAAACTTACCTTGATGTGATAGAATTATATAATCCATCTGGATTAGATTTTGATTTAGAA 19587 | || || | | || | | || || | | ||| || ||||||||||| ||| Sbjct 8516 GATACCTATAATCAAACCATCACAATGTACAACGCCTATGGCTTGGATTTTGATTTGGAA 8575 Query 19588 AATGG 19592 ||||| Sbjct 8576 AATGG 8580 >seq329 Length=25976 Score = 96.9 bits (106), Expect = 5e-15 Identities = 247/374 (66%), Gaps = 18/374 (5%) Strand=Plus/Plus Query 19228 CCTTTTATTGATACATCAATAAATGCAATTTGGAATGATTGGCAACATTATCCCAACGGC 19287 |||||||||||| | | |||||| |||| |||||||||| ||||||| | || Sbjct 22650 CCTTTTATTGATGTTACTGTGAATGCAGAATGGAGTGATTGGCAAAATTATCCAGAAGGT 22709 Query 19288 AGACCAAATTATTTATATTCCAAACAAGCTGTTGAATGGAATGCTGATGGTTTAGTATTT 19347 ||||||||| | ||||| |||||| |||| | ||| |||||||| | || Sbjct 22710 AGACCAAATCCAATTTATTCTCAACAAGTCATTGATTATAATCTAGATGGTTTGATTCTT 22769 Query 19348 GGATTTATTACATTATCTGCTAAAGGTAAGGCTTGTTGGGCTGCTCAAGATACTATGCCA 19407 || || || || ||||| | | | |||||||||||| ||||| || |||| Sbjct 22770 GGTTTCATCACTCTATCTACATCAAACACTGCTTGTTGGGCTTCTCAACCCACAATGCAT 22829 Query 19408 TTAGACTGGTCTTTACCTTTGGCCAAAGAACTTACTTTATCC----GGTAAAGAGACAAT 19463 | || ||| | |||| ||||| |||| ||||| | |||| | | || Sbjct 22830 CTCGATTGGGCACTACCATTGGCTGAAGA--------TATCCAAAAGTTAAATAAAAAAG 22881 Query 19464 TA----TTTCATTTGGTGGAGCAAGTAACCCAGATATT-TCATATAAATTTTCCATTGAT 19518 || | ||||||||||| ||| || || ||| || | ||||| || ||||| Sbjct 22882 TAATCGTATCATTTGGTGGTGCATCAAATAGTGACATTAGCACA-AAATTCTCTGTTGAT 22940 Query 19519 GAATTGGTTCAAACTTACCTTGATGTGATAGAATTATATAATCCATCTGGATTAGATTTT 19578 || ||||| || || || | | || | | || ||| ||| |||||| |||||| Sbjct 22941 GATTTGGTACACACCTATAATCAAACTATCACAATGTACAATGCATATGGATTGGATTTT 23000 Query 19579 GATTTAGAAAATGG 19592 ||||| || ||||| Sbjct 23001 GATTTGGAGAATGG 23014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658393093510880