Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq697 248 1e-60 seq2 107 2e-18 >seq697 Length=10231 Score = 248 bits (274), Expect = 1e-60 Identities = 449/645 (70%), Gaps = 25/645 (4%) Strand=Plus/Minus Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 ||| |||||| ||||| | || || || |||||||| | ||| || | || ||||| | Sbjct 5953 ACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGA 5894 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAA---TGATC 19069 |||| ||||| ||||||| || | ||| || | ||| || ||||| ||||| || Sbjct 5893 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGA-GCAAAAACTGCCG 5835 Query 19070 CAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA--ACTAGC 19127 | ||||| | ||||| || || || ||||| ||||||| | ||| || | | | || Sbjct 5834 CTGAAAA--AGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGC 5777 Query 19128 ATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGT 19187 | || |||||| ||| |||||| || ||||||||||| ||||| || || || Sbjct 5776 -----TGTTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGT 5722 Query 19188 CTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAA 19247 ||| || | || ||||| | | || | | |||| | || | || ||||| Sbjct 5721 CTCGATGGCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAA 5662 Query 19248 TAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCT 19307 | |||||| | |||||||| || ||||| || || || || || || || |||||||| Sbjct 5661 GAGACTGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCT 5602 Query 19308 TGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAA-ATTTTCATTAACTATTC 19366 || |||| || || |||||||| || || |||| ||| ||||||||| || || | Sbjct 5601 AGCCTCTGGAATTTGAACTTCACT-CATAAACTTTGTGGCAAGATTTTCATTGACAATAC 5543 Query 19367 CATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCATC--TGA 19421 ||||||| || || ||||| || || |||| || |||| ||| | ||| | | Sbjct 5542 CATCACTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTA 5483 Query 19422 GGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAA 19481 || ||| ||||||| || | |||| | ||||| | |||||| |||||||||| Sbjct 5482 ATTTCTTGT--TCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAA 5425 Query 19482 AGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAAC 19541 | || || |||| ||| ||||| |||||||||||| | || || || |||| || Sbjct 5424 ACTGGCTTCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACAC 5365 Query 19542 AAATCTATTTTTATT-TTCTTTAAGAATAG--GTTCCATTTTTTG 19583 |||||||| |||||| | |||||| | | | ||||||| |||| Sbjct 5364 AAATCTATCTTTATTCTCCTTTAATATTGGCTCTTCCATTATTTG 5320 >seq2 Length=160969 Score = 107 bits (118), Expect = 2e-18 Identities = 230/344 (67%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 48249 TCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATA 48308 || || | ||| | ||| || ||||| ||| |||| | || | ||| || | ||| Sbjct 38746 TCTCTGGCTCTCATTTCCTCTTTGCCGTGGTTCTTTTTCAAATCGATAAACTCAAAAATA 38687 Query 48309 TCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGA 48368 || || |||||||| || || || | || | |||| || || ||| ||||| Sbjct 38686 TCGGCGTGCCATGGCTCCAAGTAGACGGCAAAGGCACCCTTTCTCTTGCCACCGCCTTGG 38627 Query 48369 TCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATA 48428 || | ||||||||||| | ||| | || | | ||| ||||||||||| || ||| | Sbjct 38626 TCGACGTATCTGGCAGTGTCATTAAAGACACGAAGCATGGGGACAATACCGTTGGATGTG 38567 Query 48429 CCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATA 48488 || ||||| || |||||||| | || ||||| || || | | ||||| || Sbjct 38566 CCGTTGGTGCCACGGATATAACTGCTGCTGGCTCTGATCTTGTGACAGGCGATACCAATG 38507 Query 48489 CCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATA 48548 ||||| || |||| || || |||||| |||| || || ||||| || || ||||| Sbjct 38506 CCACCGGCAGATTTACTGATGAGGGCACACTGTTTGAGAGTGTCATAGATACCGTCTATC 38447 Query 48549 CTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 || || |||| | | || |||||||| ||||| || || Sbjct 38446 GAGTCTTCCTTCATTTGCACGAGGAAACAACTTGACATCTGAGG 38403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562100171629920