Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq697 196 6e-45 >seq697 Length=10231 Score = 196 bits (216), Expect = 6e-45 Identities = 407/602 (68%), Gaps = 8/602 (1%) Strand=Plus/Minus Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 |||| ||||| ||||| | || || | ||| || || | ||| || | || ||||| | Sbjct 5953 ACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGA 5894 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAG 37287 | || || || ||||| ||||| | ||| || | |||||| || | |||||| | | | Sbjct 5893 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGA-GCAAAAACTGCCG 5835 Query 37288 AAAAGAAA-ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 | ||| ||||| || || || ||||| || || | |||| | || | | || Sbjct 5834 CTGAAAAAGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGCTG 5775 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 | | |||||| | || ||| || ||||| ||| ||||| || || || Sbjct 5774 TTG---GTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCG 5718 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 || || || || || | | ||||| | || ||| || || || || || | | | Sbjct 5717 ATGGCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGA 5658 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 || || | || || || || |||||||| || || || || ||||| ||||| ||||| Sbjct 5657 CTGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCC 5598 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 || | | |||||| || | | |||| | | || | |||||||| || || |||||| Sbjct 5597 TCTGGAATTTGAACTTCACTCATAAACTTTGTGGCAAGATTTTCATTGACAATACCATCA 5538 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATCATTTGATAAT 37643 || || || || || || | ||||| ||| |||| | ||| ||||||| || Sbjct 5537 CTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAATTTC 5478 Query 37644 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCC 37703 || |||||||| || | |||| || ||||||| ||| || | ||||||||||| || Sbjct 5477 TTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTGGCT 5418 Query 37704 AATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTA 37763 || |||| |||||| |||| |||||||| |||| ||||| |||| ||||||||| Sbjct 5417 TCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAATCTA 5358 Query 37764 TC 37765 || Sbjct 5357 TC 5356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592307707937120