Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq79 188 6e-43 seq1179 179 3e-40 seq57 167 2e-36 seq778 156 3e-33 seq298 116 3e-21 >seq79 Length=61457 Score = 188 bits (208), Expect = 6e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| | | || |||||||| || ||||||||||| || ||||| || | Sbjct 10983 CCACCTCTTAATCTAAGGACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAT 11042 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 11043 AAGGTTCTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGG 11102 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||||||||| |||||| |||| | ||| ||||| ||| ||| Sbjct 11103 ATACCTTCTTTGTCTTGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACT 11162 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| |||||||| ||||||||||| ||||| || ||||| Sbjct 11163 TCAAGGGTGATGGTTTTGCCAGTTAAAGTTTTAACAAAAATTTGCAT 11209 Score = 179 bits (198), Expect = 3e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| || |||||||||||||| || |||||||| | | ||| | |||| ||| Sbjct 10317 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGATAAAGTACGACCATCTTCC 10376 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| ||||| || ||||| ||||||||||| ||||| |||||||| |||||| Sbjct 10377 AATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTGA 10436 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| |||| | ||||| || ||| ||||||||||| | ||||| Sbjct 10437 ATTTTAGTTTTAACATTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATGGTTTTA 10496 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || || || ||||| Sbjct 10497 CCAGTCAAGGTTTTGACGAAAATTTGCAT 10525 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||||||||| || |||||||||||||| || ||||| || | | ||| | | || || Sbjct 10544 AACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTACGACCGTCTTC 10603 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| ||||| || || || | | ||||||||||| || || |||||||| ||||| Sbjct 10604 TAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTG 10663 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| |||||| |||| | ||| ||||| ||| |||||||| |||| ||||| Sbjct 10664 AATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCAACTTCAAGGGTGATGGTTTT 10723 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||||||| || || || ||||| Sbjct 10724 ACCAGTTAAAGTTTTGACGAAAATTTGCAT 10753 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||||||||| |||||||||||||| || ||||| || | | |||||| |||| || Sbjct 10773 ACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCT 10832 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| ||||| || ||||| ||||||||||| || || |||||||| ||||| Sbjct 10833 AATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 10892 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || |||| | ||||| || ||| ||||||||||| | || || Sbjct 10893 ATCTTGGTCTTAACGTTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATAGTCTTA 10952 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || || || ||||| Sbjct 10953 CCAGTCAAGGTTTTGACGAAAATTTGCAT 10981 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||| ||||| | | | |||||||| || || ||||| ||||| || || || || Sbjct 10068 TTTCCACCTCTAAGTCTGAGGACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAGTCA 10127 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | ||| | | || || ||||| ||||| || || || | | ||||||||||| Sbjct 10128 GATAAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGT 10187 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 || || ||||| ||||||||||| ||| || || |||| | || ||||| ||| Sbjct 10188 GGGATACCTTCCTTATCTTGAATCTTTGTCTTAACGTTTTCAATGGTATCAGAGCCTTCG 10247 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || | || || || || || ||||| || || || ||||| Sbjct 10248 ACTTCAAGGGTAATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10297 >seq1179 Length=2421 Score = 179 bits (198), Expect = 3e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| | | |||||||||||| || ||||||||||| || ||||| || | Sbjct 2201 CCACCTCTTAATCTGAGAACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 2142 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || |||||||| ||||||||||| || ||||| ||||||||||| || Sbjct 2141 AAAGTTCTACCGTCTTCCAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGG 2082 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||||||||| || || | || | || ||||| ||| ||| Sbjct 2081 ATACCTTCTTTATCTTGAATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAACT 2022 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| ||||| || ||||| ||||| || || || ||||| Sbjct 2021 TCAAGGGTGATGGTTTTACCAGTTAAGGTTTTAACGAAAATTTGCAT 1975 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || ||||||||||| || || || || | | ||||| |||| ||| Sbjct 2411 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTACCATCTTCC 2352 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||||||||| || | | ||||||||||| ||||| ||||||||||||||| Sbjct 2351 AATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATCTTGA 2292 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| | || | || || || ||| |||||||| |||| ||||| Sbjct 2291 ATTTTAGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGTTTTA 2232 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| || ||||| || ||||| Sbjct 2231 CCAGTCAAAGTCTTGACAAAAATTTGCAT 2203 >seq57 Length=71319 Score = 167 bits (184), Expect = 2e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||||||||| || |||||||| ||||| || ||||| || | | ||| | |||| || Sbjct 43433 AACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGACCATCCTC 43492 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 |||||| ||||| ||||| || ||||| ||||||||||| || || |||||||| ||||| Sbjct 43493 CAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTG 43552 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| ||| ||| |||| | ||||| || ||| ||||||||||| | ||||| Sbjct 43553 AATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCCTTCTACTTCAAGAGTAATGGTTTT 43612 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||||| ||||| || ||||| Sbjct 43613 ACCAGTGAGAGTTTTAACAAAAATTTGCAT 43642 Score = 163 bits (180), Expect = 2e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 |||||||||||| || ||||||||||| || |||||||| | | |||||| |||| || Sbjct 43889 AACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTACCATCTTC 43948 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| ||||| || || || ||||| ||||||||||| ||||| |||||||| ||||| Sbjct 43949 TAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTG 44008 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| || || || |||| | |||||| || ||| ||||||||||| | ||||| Sbjct 44009 AATCTTGGTCTTGACGTTTTCAATAGTGTCTGAGCCTTCGACTTCAAGAGTAATGGTTTT 44068 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || || || || ||||| Sbjct 44069 ACCAGTCAAGGTCTTGACGAAAATTTGCAT 44098 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||||||||| || ||||||||||| |||||||| || | | |||||| |||| || Sbjct 44118 ACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGATAAAGTTCTACCATCTTCT 44177 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| ||||| || | | ||||||||||| || || ||||| ||||||||| Sbjct 44178 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCTTGA 44237 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| |||| | || ||||| ||| |||||||| || | ||||| Sbjct 44238 ATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCAAGGGTAATGGTTTTA 44297 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||||| ||||| || ||||| Sbjct 44298 CCAGTGAGAGTTTTAACAAAAATTTGCAT 44326 Score = 136 bits (150), Expect = 3e-27 Identities = 184/257 (72%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 101220 TTTATTTAATATACTAGACATTT-------CCTCCTCTTAAACGTAAAACTAAATGAAGG 101272 ||| |||| |||| |||| | || || ||||| | | | ||||||||| ||| Sbjct 42930 TTTTTTTATTATAATAGAGAGTTTTAGTTACCACCTCTGAGTCTGAGAACTAAATGGAGG 42989 Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 |||||||| ||||| || || || || | | ||| | | || || ||||| ||||| Sbjct 42990 GTAGATTCCTTTTGGATGTTATAGTCAGATAAAGTACGACCGTCTTCTAATTGTTTACCA 43049 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || ||||| ||||||||||| ||||| |||||||| |||||||| || || Sbjct 43050 GCAAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTGAATCTTGGTCTTG 43109 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || |||| | || ||||| ||| |||||||| || | ||||| || || || || Sbjct 43110 ACGTTTTCGATGGTATCAGAGCCTTCGACTTCAAGGGTAATGGTTTTACCAGTCAAGGTC 43169 Query 101453 TTTACAAATATCTGCAT 101469 || || || || ||||| Sbjct 43170 TTGACGAAAATTTGCAT 43186 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||||||||| || |||||||||||||| ||||||||||| | | || | |||| || Sbjct 43205 AACTAAATGGAGAGTAGATTCTTTTTGGATATTGTAATCAGACAAGGTACGTCCATCTTC 43264 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| ||||| || || || ||||| ||||||||||| || || ||||| |||||||| Sbjct 43265 TAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCCTTATCTTG 43324 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| || || ||| |||| | || ||||| ||| ||||| || || | || || Sbjct 43325 AATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCGAGGGTAATGGTCTT 43384 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || || || || ||||| Sbjct 43385 ACCAGTCAAGGTCTTAACGAAAATTTGCAT 43414 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| ||||||||||||||||| || || || || | | ||| | | || || Sbjct 43662 ACTAAATGGAGGGTAGATTCTTTTTGGATGTTATAGTCAGATAAAGTACGACCGTCTTCT 43721 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| || || || | | ||||||||||| ||||| |||||||| |||||| Sbjct 43722 AATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTGTCTTGA 43781 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| || |||| | || ||||| ||| ||||||||||| | || || Sbjct 43782 ATCTTGGTTTTAACGTTTTCAATGGTATCAGAACCTTCAACTTCAAGAGTAATGGTCTTA 43841 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || || || || ||||| Sbjct 43842 CCAGTCAAGGTCTTAACGAAAATTTGCAT 43870 >seq778 Length=8042 Score = 156 bits (172), Expect = 3e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 |||||| || ||||| ||||||||||| || ||||| || | | |||||| |||| || Sbjct 4709 AACTAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTC 4768 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| ||||| ||||| || ||||| ||||||||||| || || |||||||| ||||| Sbjct 4769 TAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTG 4828 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || || || |||| | |||||||| ||| ||||| ||||||| || || Sbjct 4829 GATCTTGGCCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCGAGAGTGATGGTCTT 4888 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| ||||| || || || |||||| Sbjct 4889 ACCAGTTAAGGTTTTAACGAAGATTTGCATG 4919 >seq298 Length=27992 Score = 116 bits (128), Expect = 3e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||| |||||||||||||||||||| || |||||||||| | ||| | | || || Sbjct 13193 ACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGATAAAGTACGACCGTCTTCT 13252 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| ||||| || | | ||||||||||| || || |||||||| ||||| Sbjct 13253 AATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTCTTGG 13312 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| |||| | || || || ||| ||||| || || | ||||| Sbjct 13313 ATTTTAGCCTTGACATTTTCGATGGTATCGGAACCTTCAACTTCGAGGGTAATAGTTTTA 13372 Query 101441 CC 101442 || Sbjct 13373 CC 13374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396272469198396