Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq79 105 5e-18 seq57 98.7 8e-16 seq1179 96.9 3e-15 >seq79 Length=61457 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || |||||||| || ||||||||||||| | | ||| | || ||| Sbjct 10317 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGATAAAGTACGACCATCTTCC 10376 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || |||||||| ||||| || | || |||||||| | |||| || || ||||| | Sbjct 10377 AATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTGA 10436 Query 48678 ATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 || ||| ||||| ||| | | | ||||| | || || || | ||||| ||||| Sbjct 10437 AT-TTTAGTTTTAACATTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATGGTTTT 10495 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| || ||||| ||||| Sbjct 10496 ACCAGTCAAGGTTTTGACGAAAATTTGCAT 10525 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| |||||||| || ||||| ||||||| ||| | | || || Sbjct 11001 ACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAGGTTCTACCATCTTCT 11060 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||||||||| || | || |||||||| | || | || || ||||| | Sbjct 11061 AATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGA 11120 Query 48678 ATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 || ||| || |||||| | | || || || | || || || | || || ||||| Sbjct 11121 AT-TTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACTTCAAGGGTGATGGTTTT 11179 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||| |||||||| ||||| Sbjct 11180 GCCAGTTAAAGTTTTAACAAAAATTTGCAT 11209 >seq57 Length=71319 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || ||| ||||||||||||||||| ||||||| | ||| | | || || Sbjct 44118 ACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGATAAAGTTCTACCATCTTCT 44177 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| ||||| || |||| |||||||| | || | || ||||| || | Sbjct 44178 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCTTGA 44237 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | || || || | ||||| ||||| Sbjct 44238 ATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCAAGGGTAATGGTTTTA 44297 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | |||||| |||||||| ||||| Sbjct 44298 CCAGTGAGAGTTTTAACAAAAATTTGCAT 44326 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || ||| |||||||| || ||||||||||||| | ||| | | || || Sbjct 43890 ACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTACCATCTTCT 43949 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || |||||||| || || | || |||||||| | |||| || || ||||| | Sbjct 43950 AATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTGA 44009 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | || ||||| | || || || | ||||| ||||| Sbjct 44010 ATCTTGGTCTTGACGTTTTCAATAGTGTCTGAGCCTTCGACTTCAAGAGTAATGGTTTTA 44069 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || ||||| ||||| Sbjct 44070 CCAGTCAAGGTCTTGACGAAAATTTGCAT 44098 >seq1179 Length=2421 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||||||||||| || || ||||||| ||| | | || ||| Sbjct 2411 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTACCATCTTCC 2352 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| ||||| || |||| |||||||| | |||| || || || || | Sbjct 2351 AATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATCTTGA 2292 Query 48678 ATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 || ||| ||||| ||| | | | | || || | || || || | || || ||||| Sbjct 2291 AT-TTTAGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGTTTT 2233 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || |||||||| ||||| Sbjct 2232 ACCAGTCAAAGTCTTGACAAAAATTTGCAT 2203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380931898792644