Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1014 127 5e-24 >seq1014 Length=3937 Score = 127 bits (140), Expect = 5e-24 Identities = 323/485 (67%), Gaps = 15/485 (3%) Strand=Plus/Plus Query 150309 AAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGATT 150367 |||||||| | |||||| | |||||| | || |||| || || || | |||| | Sbjct 1228 AAGGTAAATTGGATCCAGTCATTGGTAGAGATGATGAAATTAGAAGAG-TCATTCGTGTC 1286 Query 150368 CTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACA 150427 || ||| | | |||||| || ||| | | |||||||||| ||||| |||||||| Sbjct 1287 CTCTCTAGAAGAACCAAGAATAATCCAGTACTCATTGGTGAACCTGGTGTAGGTAAAACT 1346 Query 150428 CAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAA 150487 | ||||| || || || ||| | || | ||||||| ||||||| | | || Sbjct 1347 GCCGTAGTTGAAGGTTTGGCTCAAAGAATTGTACGTGGTGATATTCCAGACAATTTAAAT 1406 Query 150488 GATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGT 150547 | | || || || | ||| ||||||||||||| | ||| ||| | |||||| | ||| Sbjct 1407 GCTCGTG---TTATTGCCTTGGATATGGGTGCATTGATTGCCGGTGCCAAGTATAGAGGT 1463 Query 150548 GAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATGATG---TT 150604 || || ||||| | || | | || ||||| | ||||| | ||| || || Sbjct 1464 GATTTTGAAGAGAGATTAAAGGCCGTACTCAAAGAAGTTAAAGATTCCAATGGTGGAATT 1523 Query 150605 ATTCTGTTCATCGATGAAATCCA--TACTATTATGGGTGCTGGTGCGACTGGCGGCGGTT 150662 || |||| ||||||||||| || | |||| |||||| || |||| || | Sbjct 1524 ATCTTGTTTATCGATGAAATTCACTTGGTATT--GGGTGCAGGAAAAACTGATGGTG--- 1578 Query 150663 CTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATCG 150722 | ||||| ||| | |||||||| || | | |||||| ||||| || | Sbjct 1579 CAATGGATGCCGCTAATCTTTTAAAACCAATGCTTGCCAGAGGTGAACTTCGTTGTATTG 1638 Query 150723 GTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTC 150782 |||| || |||| |||||||||||| || | | ||||| ||| |||| | | |||| Sbjct 1639 GTGCCACCACCTTGGATGAATATCGTCAATATGTCGAAAAGGATCCAGCCTTTGAACGTC 1698 Query 150783 GTTTC 150787 ||||| Sbjct 1699 GTTTC 1703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147572344099544