Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 149 1e-30 seq697 141 2e-28 >seq2 Length=160969 Score = 149 bits (164), Expect = 1e-30 Identities = 299/438 (68%), Gaps = 4/438 (1%) Strand=Plus/Minus Query 222031 GACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTG 222090 ||| || | ||| |||||||| || ||| || || | |||||| ||||||| | | Sbjct 38792 GACTCTTTCCATAAAGAGGTCACTGACCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCAT 38733 Query 222091 CTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGG 222150 ||||| ||||| ||| || ||| ||| | |||||||||||| || |||||||| || Sbjct 38732 TTCCTCTTTGCCGTGGTTCTTTTTCAAATCGATAAACTCAAAAATATCGGCGTGCCATGG 38673 Query 222151 CTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTC 222210 ||||| |||||||| | || || || |||| || || || || || || Sbjct 38672 CTCCAAGTAGACGGCAAAGGCACCCTTTCTCTTGCCACCGCCTTGGTCGACGTATCT-GG 38614 Query 222211 CAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCT 222269 ||| | | || |||| ||||| | || || | ||||||||| ||||||||||| Sbjct 38613 CAGTGTCATTAAAGACACGAAGCATGGGGACAATACCGTTGGATGTGCCGTTGGTGCCAC 38554 Query 222270 TAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC-ATGCCGATACCACCGGCGTGT 222328 || || | || ||| || | || || ||| | || || || |||||||| | Sbjct 38553 GGATATAACTGCTGCTGGCTCTGATCTT-GTGACAGGCGATACCAATGCCACCGGCAGAT 38495 Query 222329 TTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTG 222388 || ||| | ||| || ||||||||||| ||| || || || ||||| ||||| Sbjct 38494 TTACTGATGAGGGCACACTGTTTGAGAGTGTCATAGATACCGTCTATCGAGTCTTCCTTC 38435 Query 222389 ACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTG 222448 | | || || |||||| |||||||||| |||| | || | |||||| || ||| Sbjct 38434 ATTTGCACGAGGAAACAACTTGACATCTGAGGGTTGGGTGTACCCGAGTTAAAGAGGGTG 38375 Query 222449 GGACTGGCGTGTGTAAAG 222466 || ||||||| |||||| Sbjct 38374 GGGGTGGCGTGGGTAAAG 38357 >seq697 Length=10231 Score = 141 bits (156), Expect = 2e-28 Identities = 438/666 (66%), Gaps = 25/666 (4%) Strand=Plus/Plus Query 25467 ACACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGA 25526 |||||| ||||||||| |||||||||| | ||| || | ||||| |||||||| Sbjct 5382 ACACAATGATATATGGAAGATGTACAAACAAGCTGAAGCCAGTTTTTGGACAGCCGAAGA 5441 Query 25527 GATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTT 25586 |||||| |||| || | ||| ||| || || || || | | | || Sbjct 5442 AATTGATTTGGCACCAGATCTCAACGATTGGAACAAGAAATTAAATGATAACGAACGTTA 5501 Query 25587 TCTCAAGTAC---GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCT 25643 | ||| | | || ||||| || || || ||| ||||||||| || || || ||||| Sbjct 5502 TTTCATATCCAATGTTTTGGCCTTTTTCGCTGCCAGTGATGGTATTGTCAATGAAAATCT 5561 Query 25644 GTGCGAGAGA-TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCC 25702 ||| | | | || | || ||||| || ||||| | |||||||| || |||| Sbjct 5562 -TGCCACAAAGTTTATGAGTGAAGTTCAAATTCCAGAGGCTAGATGTTTCTATGGCTTCC 5620 Query 25703 AGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACA 25759 | || ||||| ||||| | || || ||| || || || |||| || |||| Sbjct 5621 AAATTGCCATTGAAAACATCCATTCAGAGACCTA---CAGTCTCTTGATCGACACCTACA 5677 Query 25760 TTACAGACGTCGCCGAGAGAGATCGG-CTGTTTGGTGCCATCGAGCACATACCCAGCATC 25818 | |||| || || | ||| | || || ||||||||| ||| ||| | | Sbjct 5678 TCCAAGACAGCGTGGAAA-AGAGCAAACTATTCAACGCCATCGAGACCATCCCCTGTGTG 5736 Query 25819 AAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAG 25878 || | |||||| ||||| ||| ||||||| || | ||| | |||| ||| Sbjct 5737 AAAAAGAAGGCCGACTGGGCATTGAGATGGATCACCAAC---AGCAAATCATTTGCCGAA 5793 Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCG---GTTCGTTTGCGGCC 25935 || | || |||||||| || || ||||| ||||||||||||| ||| ||||| | Sbjct 5794 CGTTTAGTTGCCTTTGCCGCCGTCGAGGGTATCTTTTTCAGCGGCAGTT--TTTGC-TCT 5850 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATC 25995 ||||| ||||||||| | || |||||||| || || || |||||||||||| Sbjct 5851 ATCTTTTGGCTCAAGAAACGTGGTTTGATGCCCGGTTTGACATTCTCTAACGAGCTCATC 5910 Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC 26055 || | ||||||||||||||| | | |||||||| || | ||| | | | ||| || Sbjct 5911 AGTCGTGACGAGGGTCTCCACTGCAACTTTGCCTGTTTGTTGTACTC---CAAGTTGGTC 5967 Query 26056 CACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAG 26115 |||||| | ||||| || | | ||||||| ||| || || | ||| || Sbjct 5968 AACAAACTCGATGCCAAGACCATCGAAACCATCATCAGAGACGCCGTTGCCTGCGAAAAA 6027 Query 26116 GAGTTT 26121 |||||| Sbjct 6028 GAGTTT 6033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928830542232320