Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2 156 2e-33 >seq2 Length=160969 Score = 156 bits (172), Expect = 2e-33 Identities = 189/255 (74%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 25906 CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAA 25965 |||||| || |||||||| ||| | |||||||| | || | ||| | || ||||| Sbjct 38810 CCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGAGGTCACTGACCCAGAGGGCGTAAAA 38751 Query 25966 TAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAA 26025 | ||||| ||||||||||| ||||| ||||| |||||||| | ||| | || ||||| Sbjct 38750 GAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTTCTTTTTCAAATCGATAAACTCAAA 38691 Query 26026 AATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACC 26085 |||||| | ||||||||| || || |||| ||||| ||| ||||| || || || || Sbjct 38690 AATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAAGGCACCCTTTCTCTTGCCACCGCC 38631 Query 26086 TTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGA 26145 ||| || |||||||| ||||| ||||| || || | ||| || || ||| | |||| Sbjct 38630 TTGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAGCATGGGGAC-AATACCGTTGG 38572 Query 26146 AAAT-CCGTTTGTGC 26159 | | ||||| |||| Sbjct 38571 ATGTGCCGTTGGTGC 38557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253036212940100