Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq434 161 1e-34 >seq434 Length=20736 Score = 161 bits (178), Expect = 1e-34 Identities = 363/538 (67%), Gaps = 22/538 (4%) Strand=Plus/Minus Query 138162 AATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGT 138221 ||||| | ||||| || || | ||| ||||| | || ||||| ||||| || ||| Sbjct 5590 AATGGGGCAAGATGAGAGGCAACGCAAATTGGACCCATACCTGGACCACCACCACCGTGT 5531 Query 138222 GGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGT 138281 ||||||||||| ||||| || | ||| | || || ||||| |||||| ||||| ||| Sbjct 5530 GGAATACAGAAAGTCTTGTGGAGATTCAAGTGGCAAACATCGGCACCAATGTCACCTGGA 5471 Query 138282 TTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTG 138341 ||||| || || ||||| | ||| |||||||| | ||| || |||||||| | Sbjct 5470 CGACAGAGACCAACTTGAGCATTCATATTGGCACCATCCATATAGACTTGACCACCGTAT 5411 Query 138342 TCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGA 138401 | || | || | || || | | || | | ||| || ||||| || || |||||| Sbjct 5410 TGGTGGATGAGTTCGCACATTTCTTTGGCGCCTTCTTCGAAAACACCGTGGGTAGATGGA 5351 Query 138402 TATGTAATCATAATACATGAGAGTTCAAATGTATTCATGATTGCTTTCTTCT-------C 138454 || || ||||||| | | | |||| ||| ||| ||| |||| || Sbjct 5350 TAGGTGATCATAA-----GGGCGGCCAAA-GTA-TCACGATACTTTTCAGCTTTGGCACG 5298 Query 138455 TAGATC--TTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATT 138512 || ||| |||| || | || |||| | || || |||||| | ||||||| ||| Sbjct 5297 TAAATCGGCTTGA--TCGACATTACCATTGGCGTCGCAATTGACAACGACAACTTGCATA 5240 Query 138513 CCTGCCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACA 138572 || ||||| || ||| ||| ||||| || || || || || |||| |||| ||| | Sbjct 5239 CCGGCCATAACAGCAGAAGCTGGATTGGTACCGTGGGCAGAGACTGGAATCAAACAAATG 5180 Query 138573 TTTCTTTTATCATCTCCTGATCCT--TGATGATATGCTTGGATTGCTAACAGTCCTGCAT 138630 ||||||| | | ||| | || ||| |||| || | || | | || ||||||| Sbjct 5179 TTTCTTTGTGCTTGACCT-TTGCTAATGA-GATAGGCACGAATGACCATCAAACCTGCAT 5122 Query 138631 ACTCACCCTGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATC 138688 ||||||| || || || ||||| |||||||| || || ||||||| ||||| || Sbjct 5121 ACTCACCTTGGGAACCAGCGTTTGGTTGTAAGGAGCAAGCGGCAAAACCAGTGATTTC 5064 Score = 104 bits (114), Expect = 3e-17 Identities = 201/295 (68%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 139263 CCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCT 139322 || |||| ||||||||| | ||||| | ||| ||| || || | || ||||| | Sbjct 4438 CCTTCTGGACCATGATAGACGGCATACATGGCAGCCATGTTGGCCAAAAGGGCTTGAGAG 4379 Query 139323 GTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCT 139382 ||||| ||||||||||| || || || | | ||| || || || | |||||| || || Sbjct 4378 GTGCAAATGTTACTGGTGGCCTTTTCACGACGAATGTGTTGTTCACGAGTTTGGAGGGCC 4319 Query 139383 AATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGCCAGGTA 139440 | | ||| ||| ||||||||| |||| ||||| ||| | |||||||| || | Sbjct 4318 ATACGGTAGGCAAGATTGCCTTGCTTGTCTTTGCTGAC--ACCAATGATTCTGCCGGGAA 4261 Query 139441 TCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCA 139500 | | || ||||| | || |||||||| || || || ||||| || | || | Sbjct 4260 GTAAACGACTGTATTTGTCGCTGGTGGCAAAGAAGGCGGCGTGTGGACCACCAAAACCAA 4201 Query 139501 TAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCCCACTCACC 139555 || | |||||| ||||| |||| | ||||||||| ||||| ||||| Sbjct 4200 GGGGTACACCAAATCTTTGAGAGTTACCGAGAGCAATATCGGCACCCCATTCACC 4146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578989512374560