Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq41 279 7e-70 seq37 244 1e-59 >seq41 Length=78064 Score = 279 bits (308), Expect = 7e-70 Identities = 664/991 (67%), Gaps = 41/991 (4%) Strand=Plus/Plus Query 47563 TTAAAAGAAGTTTTAGGTTCCCAACCCAATTTTTTCTTTGCCTTAGAGGCATCACCTAAT 47622 |||||| | ||||| |||||| |||| ||| || || || | | || ||| || Sbjct 27913 TTAAAACTAATTTTAATTTCCCATTTTAATTCTTTTTTGGCTTTTGCTGGATTACCCAAG 27972 Query 47623 AAGGTCTCTACTTCAGCAGGACGGAAATATTTAGAGTCAATTCTGA--TAACCGTTTTAC 47680 | |||||||||| |||||||||||||| | |||||| | | ||| | | || Sbjct 27973 AGTAAATCTACTTCAGTTGGACGGAAATATTTTGGATCAATTTTAACGTAAACAAT--AC 28030 Query 47681 CA---TCAGAATCAATACCAACTTCATCAAGACCAGAACCTTCCCATCTAATATTCATAT 47737 || | ||| ||| ||||||| ||||| |||| |||| |||| | || | Sbjct 28031 CAGTCTTTTCTTCATAACCTTCTTCATCGAGACCTTCACCTCTCCATTTAATGTCAATGT 28090 Query 47738 CAAAATAAGGTGCAGATTCCTCAACAAACTGACGGACAGAATATTGATTTCCTGTGGCAA 47797 | | |||| |||||||| | | ||| | || | | || ||||| | Sbjct 28091 TGATTTCTTTAAATGATTTTTCAACAAATTCTCTGACCGGATGTGTTTCACCGGTGGCCA 28150 Query 47798 TAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTC 47857 |||| |||| || |||| |||||||| | ||| | |||||| | |||||||| ||| Sbjct 28151 AAACATAATCTTCTGGTTTGTCTTGTTGTAACATGAGCCACATTCCTTCGACATAGTCTT 28210 Query 47858 TGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTAC 47917 ||||||| ||||| ||||| | |||| | || || ||||| | |||| | || Sbjct 28211 TGGCATGGCCCCAATCACGTTGGGCATAGATGTTGCCGAGATAGAGTACTTCTTTGTGAC 28270 Query 47918 CTTCAGAG-ATTGCTTTTAATGC-TCTTGTAATCTTACGAGTTACAAAAGTTTCACCACG 47975 | |||| | | | | | | ||| || || |||||||| |||||||| ||| | Sbjct 28271 CA--AGAGCAATACGTGCCACGAATCTAGTGATTTTACGAGTGACAAAAGTGGGACCTCT 28328 Query 47976 TCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACG 48035 |||||||||||| |||||||| |||||||| | ||||| ||||| ||| | |||||| Sbjct 28329 TCTTGGAGATTCGTGATTAAAGAGAATACCGTTGCAGGCGTACATGTTGTAGGCTTCACG 28388 Query 48036 ATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATA 48095 |||||| | |||||||| || | |||| |||| | | || || ||||| ||||| Sbjct 28389 ATAGTTGACCAAGATCCAGTAGGCAAATTGTTTGGCAAGAGCGTATGGTGAACGGGGATA 28448 Query 48096 GAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGA 48155 ||| || |||||||| | |||||| |||||| ||||| ||||| || ||||||||||| Sbjct 28449 GAATGGGGTGGTCTCGGATTGTGGAACCTCTTGAACCTTGCCATAGAGCTCACTGGTGGA 28508 Query 48156 TGCTTGATAGATACGAACCCTATCTTC--CATCTCAAGCAAACGGACTGCCTCAAGCACT 48213 ||||| |||| | |||| | | ||| | |||| | |||||| || || || | | Sbjct 28509 GGCTTGGTAGAATCTAACCTTGTTTTCGAGACCTCATG--AACGGATGGCATCGAGGATT 28566 Query 48214 CTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTT 48273 || || | || | | || | |||| || || | ||| ||||| || ||||| Sbjct 28567 CTGAGTGCACCCAAACCGTCGACATTGGCAGTGTATTCTGACATGTCAAAAGAGACCTTG 28626 Query 48274 ACATGACTCTGTGC-CCCAAGATTATAAATCTC-ATCTGGTTGAACCTGCTGAATAACCC 48331 || ||||| || || |||||| ||||| || || | | |||| || | |||| Sbjct 28627 ACGTGACTTTGGGCACCCAAG-TTATAGATTTCGGTGGGATTGACTTTGGAG-ATAATAG 28684 Query 48332 TCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCA-----ATTTT----------- 48375 || || || ||||||||||| | |||||||| || | || || Sbjct 28685 AGACCAAGTTGGTAGAGTCTGTGAGATCTCCATAGTGGAGAATCATCTTGCCCTTGCCAG 28744 Query 48376 --AATTGATC---ATAAATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGA 48430 |||||| ||| | || |||||||| ||||||| | || | || | || Sbjct 28745 TGTGTTGATCTTGATAGAGATGTTCAATTCTGCTAGTATTAAACGATGATGAACGTCTGA 28804 Query 48431 CAATACCATGAACCTCATACCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTT 48490 ||||||||| ||| || |||||| || ||| | |||| || ||||| ||||||| Sbjct 28805 TAATACCATGTACCATGTATCCCTTTGAAATAAGTAACTCTGTCAAATATGATCCATCTT 28864 Query 48491 GTCCTGTAATACCAGTGATTAAAGCAACTTT 48521 | ||| ||||||| | || || |||||||| Sbjct 28865 GACCT-TAATACCTGAAATCAAGGCAACTTT 28894 >seq37 Length=80241 Score = 244 bits (270), Expect = 1e-59 Identities = 538/799 (67%), Gaps = 37/799 (5%) Strand=Plus/Minus Query 47752 GATTCCTCAACAAACTGACGGACAGAATATTGATTT---CCTGTGGCAATAACAAAATCA 47808 |||| |||||||||| | ||| | || || || || ||||| | |||| |||| Sbjct 19877 GATTTTTCAACAAACTCTCTGACTGGAT---GAGTTTCACCGGTGGCCAAAACATAATCT 19821 Query 47809 TCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCC 47868 || |||| |||||||| | ||| | ||||||| |||||||||||||| ||||||| ||| Sbjct 19820 TCTGGTTTGTCTTGTTGTAACATGAGCCACATACCCTCGACATAATCTTTGGCATGACCC 19761 Query 47869 CAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAG-AT 47927 || ||||| | |||| | || || ||||| | |||| | || |||| | Sbjct 19760 CAATCACGTTGGGCATTGATGTTGCCGAGATAGAGGACTTCTTTGTGGCCA--AGAGCAA 19703 Query 47928 TGCTTTTAATGC-TCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATT 47986 | | | | | ||| || || |||||||| |||||||| || | ||||||||| | Sbjct 19702 TACGTGCCACGAATCTGGTGATTTTACGAGTGACAAAAGTGGGGCCTCTTCTTGGAGACT 19643 Query 47987 CATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTA 48046 | |||||||| |||||||| | ||||| ||||| ||| | |||||||||||| | Sbjct 19642 CGTGATTAAAGAGAATACCGTTGCAGGCGTACATGTTGTAGGCTTCACGATAGTTGACCA 19583 Query 48047 CTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGG 48106 |||||||| || | | || || || | || || ||||| |||||||| || |||| Sbjct 19582 AGATCCAGTAGGCAAATTGCTTGGCGACGGCGTATGGTGAACGGGGATAGAATGGGGTGG 19523 Query 48107 TCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGA 48166 |||| | ||||||| |||||| || || ||||| || ||||||||||| ||||| |||| Sbjct 19522 TCTCAGACTGTGGAACCTCTTGTACTTTGCCATAGAGCTCACTGGTGGAGGCTTGGTAGA 19463 Query 48167 TACGAACCCTATCTTCCA--TCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCC 48224 | ||| | | ||| | | || | |||||| || || || | ||| || | || Sbjct 19462 ATCTGACCTTGTTTTCGAGGCCGCATG--AACGGATGGCATCGAGGATTCTGAGTGCACC 19405 Query 48225 TATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTG 48284 | | || | | || ||||| | ||| ||||| || ||||| || ||||| || Sbjct 19404 CAAACCGTCGACATTGGCGGTGTACTCTGACATATCAAAAGAGACCTTGACGTGACTTTG 19345 Query 48285 TGCCCCAAGATTATAAATCTC-ATCTGGTTGAACCTGCTGAATAACCCTCACTAAATTTG 48343 || || | |||||| || || | |||||| | || | |||| || || || | Sbjct 19344 GGCGCCCAAATTATATATTTCGGTTGGGTTGACCTTGGAG-ATAATAGAGACCAAGTTGG 19286 Query 48344 TAGAGTCTGTTAAGTCTCCATAATGCA-----ATTTTA-------------ATTGATC-- 48383 ||||||| || | || ||||| || | || ||| |||||| Sbjct 19285 TAGAGTCGGTGAGATCGCCATAGTGGAGAATCATCTTACCCTTGCCAGTGTGTTGATCTT 19226 Query 48384 -ATAAATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAA 48442 ||| | || |||||||| ||||||| | | || | || | || |||||| || | Sbjct 19225 GATAGAGATGTTCAATTCTGCTGGTATTAAATGACGATGAACGTCTGATAATACCGTGTA 19166 Query 48443 CCTCATACCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATAC 48502 | || ||||| || || | |||| || ||||| |||||||| || || |||| Sbjct 19165 CAATGTATCCCTTGGAAATGAGTAACTCTGTCAAATATGATCCATCTTGACCGGTGATAC 19106 Query 48503 CAGTGATTAAAGCAACTTT 48521 | | || || |||||||| Sbjct 19105 CCGAAATCAAGGCAACTTT 19087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665484184660960