Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq79 161 1e-34 seq697 156 6e-33 seq57 154 2e-32 seq1179 147 3e-30 seq778 134 2e-26 seq298 107 3e-18 >seq79 Length=61457 Score = 161 bits (178), Expect = 1e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 || ||||||||| ||| ||||||| || ||||| ||||| || || | |||||||||| Sbjct 11213 TATAATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAAGG 11154 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 ||||||| |||| ||| || || | |||||| ||||| |||||||| || || || || Sbjct 11153 CTCTGATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGA 11094 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 |||||| | || || | ||||||||| || | |||||| ||||| ||||| || || Sbjct 11093 TCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGACTA 11034 Query 155999 TAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||||| | || |||||||| || | ||||||||||| ||| Sbjct 11033 CAACATCCAAAAAGAATCCACTCTTCATTTGGTCCTTAGATTAAGAGGTGGT 10982 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||||||| || |||||||| | |||||||||| ||| Sbjct 10981 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACTCTTGAAGTCGAAGGTTCA 10922 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || | || || ||||| |||||||| || || || || ||| Sbjct 10921 GACACCATTGAAAACGTTAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 10862 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || |||| ||||||||| || | |||||| ||||||||||| || || || Sbjct 10861 CAACGTTTAATTTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 10802 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || ||||||||||| | ||| | ||||| ||| Sbjct 10801 ATCCAAAAAGAATCTACTCTTCATTTAGTCCTCAGACTTAGAGGTGGT 10754 >seq697 Length=10231 Score = 156 bits (172), Expect = 6e-33 Identities = 389/587 (66%), Gaps = 10/587 (2%) Strand=Plus/Minus Query 18200 TCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCG 18259 |||||| || || || |||||||| | ||| | ||| || |||||||| || || Sbjct 5903 TCGTTAGAGAATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGAGCAA 5844 Query 18260 AAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA 18319 ||||| | || || |||||||| ||| || || || | ||| | ||| ||||| Sbjct 5843 AAACTGCCGCTGAAAAAGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAA- 5785 Query 18320 CTGTATTTATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGT 18379 || |||| || | |||||| | |||||| || | | | ||| || Sbjct 5784 -TG-ATTTGCTGTTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGG 5727 Query 18380 ATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCG 18439 || |||| || || || || | | ||||| | |||| || || |||||| Sbjct 5726 ATGGTCTCGATGGCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCG 5667 Query 18440 ATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAAC 18499 || || | | || | || ||||| ||| |||| || || || || || | ||| || Sbjct 5666 ATCAAGAGACTGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAA 5607 Query 18500 GATCTAGCCTCGGGATATTGAATCTCGCT-ATAAAATCTTTCTACCAA-ATTCTCATTAA 18557 |||||||||| ||| ||||| || || ||||| |||| | ||| ||| ||||| | Sbjct 5606 CATCTAGCCTCTGGAATTTGAACTTCACTCATAAA--CTTTGTGGCAAGATTTTCATTGA 5549 Query 18558 CTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTAT 18617 | ||||| ||| | |||||||| |||||||||| ||||||| ||| |||| Sbjct 5548 CAATACCATCACTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTAT 5489 Query 18618 CCTTGAGATT---GTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCC 18674 | || | || |||||| || | | |||| || | ||||| |||||| | ||||| Sbjct 5488 CATTTAATTTCTTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCC 5429 Query 18675 AAAAAGATGATTCGGCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAATA 18734 ||||| | ||| || ||||||||||| || | ||||| | |||| || || |||| Sbjct 5428 AAAAACTGGCTTCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATA 5369 Query 18735 ATATATATCGTTTATAATTTTTTATTAACATAGGTTCTTCCATTTTT 18781 | | | ||| | | ||| | |||| || || ||||||||| || Sbjct 5368 ACACAAATCTATCTTTATTCTCCTTTAATATTGGCTCTTCCATTATT 5322 >seq57 Length=71319 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | ||||| ||||| ||||| | |||||||||| |||| Sbjct 44326 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACCCTTGAAGTCGAAGGTTCT 44267 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| || || | || || |||||||| ||||| || || || || ||| Sbjct 44266 GATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 44207 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| ||| ||||| || | |||||| ||||||||||| || || ||| Sbjct 44206 CAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAT 44147 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || ||||||||||| | ||| | ||||| ||| Sbjct 44146 ATTCAAAAAGAATCCACTCTTCATTTAGTCCTCAGACTCAGAGGTGGT 44099 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||||||| ||||| ||||| | |||||||||| || Sbjct 44098 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGCTCA 44039 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| |||||| || | || || ||||| |||||||| || || || || ||| Sbjct 44038 GACACTATTGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43979 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || |||| |||||||| || | |||||| ||||||||||| ||||| || Sbjct 43978 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGATTACAAC 43919 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || ||||||||||| | ||| | ||||| ||| Sbjct 43918 ATCCAAAAAGAATCCACTCTTCATTTAGTTCTTAGACTTAGAGGTGGT 43871 >seq1179 Length=2421 Score = 147 bits (162), Expect = 3e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || ||||||| || ||||| ||||| || || | ||||| |||| || Sbjct 1974 AATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTC 2033 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||||| || | |||||| |||||||||||||| || || || || || Sbjct 2034 TGATACAATTGATAACGTCAAGACTAAAATTCAAGATAAAGAAGGTATCCCACCCGATCA 2093 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | || || | ||| ||||| || | ||||| |||||||| || || || || Sbjct 2094 ACAACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGACTACAA 2153 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || ||||||||||| | ||||||||||| ||| Sbjct 2154 CATTCAAAAAGAATCCACTCTTCATTTAGTTCTCAGATTAAGAGGTGGT 2202 Score = 143 bits (158), Expect = 4e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| |||||||| || | ||||| |||| ||| Sbjct 2203 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACTATCACCCTTGAAGTTGAAGGTTCC 2262 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || |||| |||||| |||||||||||||| || || || || ||| Sbjct 2263 GATACAATTGATAATGTTAAAACTAAAATTCAAGATAAAGAAGGTATTCCACCCGATCAA 2322 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| ||| ||||| || | |||||| ||||| ||||| || ||||| Sbjct 2323 CAAAGACTTATTTTTGCAGGTAAACAATTGGAAGATGGTAGAACCTTATCTGACTATAAC 2382 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || ||||| || || Sbjct 2383 ATTCAAAAAGAATCCACTCTTCACTTGGT 2411 >seq778 Length=8042 Score = 134 bits (148), Expect = 2e-26 Identities = 178/246 (72%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 155806 AAAATTTAT-GTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACA 155864 |||| ||| ||||||| |||||||| || ||||||| || ||||| || || || || Sbjct 4936 AAAAACTATAGTAATAACATGCAAATCTTCGTTAAAACCTTAACTGGTAAGACCATCACT 4877 Query 155865 TTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAA 155924 | |||||||||| |||||| | || |||||| || || || ||||| |||||| Sbjct 4876 CTCGAAGTCGAAGGTTCTGACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAAGAA 4817 Query 155925 GGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGA 155984 || || || || || |||||| | || || | ||||||||| || | |||||| ||| Sbjct 4816 GGTATCCCACCCGATCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGA 4757 Query 155985 ACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGA 156044 |||||||| || || || || ||||| | || || || ||||| | ||| | ||| Sbjct 4756 ACTTTATCTGACTACAACATCCAAAAAGAATCAACCCTCCACTTAGTTCTCAGACTTAGA 4697 Query 156045 GGCGGT 156050 || ||| Sbjct 4696 GGTGGT 4691 >seq298 Length=27992 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 || ||||||||||| | ||||| |||| ||| |||| || ||| || || |||| Sbjct 13374 GGTAAAACTATTACCCTCGAAGTTGAAGGTTCCGATACCATCGAAAATGTCAAGGCTAAA 13315 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || ||||| |||||||| || || || || ||||||||| | || | ||| ||||| || Sbjct 13314 ATCCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACAA 13255 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTA 156029 | ||||| | |||||||| ||||| || || ||||| | || ||||| ||| Sbjct 13254 TTAGAAGACGGTCGTACTTTATCCGATTACAACATCCAAAAAGAATCTACCCTTCACTTA 13195 Query 156030 GTGTTAAGATTAAGAGGCGGTG 156051 || | ||| | ||||| |||| Sbjct 13194 GTCCTCAGACTCAGAGGTGGTG 13173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731860765764800