Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq697 159 1e-33 seq291 138 3e-27 seq529 109 2e-18 seq171 105 2e-17 seq240 100 8e-16 seq2 95.1 4e-14 >seq697 Length=10231 Score = 159 bits (176), Expect = 1e-33 Identities = 305/440 (69%), Gaps = 12/440 (3%) Strand=Plus/Plus Query 133227 TTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTA 133286 |||| || ||||| ||||| |||||||||||||| ||||||| | | ||| ||||| Sbjct 5516 TTTTGGCCTTTTTCGCTGCCAGTGATGGTATTGTCAATGAAAATCTTGCCACAAAGTTTA 5575 Query 133287 TGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAA 133346 || | ||||||||| | | || || | || ||||| | || ||||| || |||| Sbjct 5576 TGAGTGAAGTTCAAATTCCAGAGGCTAGATGTTTCTATGGCTTCCAAATTGCCATTGAAA 5635 Query 133347 ATATCCATTCTATCACATATTCTACTC-TAATTGATACTTACATCAAAGATACCGTCCAG 133405 | |||||||| || || | ||| | || || || |||||| |||| | ||| | Sbjct 5636 ACATCCATTCAGAGACCTACAGT-CTCTTGATCGACACCTACATCCAAGACAGCGTGGAA 5694 Query 133406 AAGCACAAACTATTCAACGCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTG 133464 ||| ||||||||||||||||| | | || | || ||| | |||||||| | ||||| Sbjct 5695 AAGAGCAAACTATTCAACGCCA-TCGAGACCATCCCCTGTGTGAAAAAGAAGGCCGACTG 5753 Query 133465 GGCTATTAAATGGATCCAGGACAAGCGTGCGAGT--TTTGCTACTCGTCTCGTTGCTTTT 133522 ||| | | ||||||| || | | || | | ||||| ||| | ||||| ||| Sbjct 5754 GGCATTGAGATGGATC----ACCAAC-AGCAAATCATTTGCCGAACGTTTAGTTGCCTTT 5808 Query 133523 GCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAG 133582 || | || ||||| || |||||||| || || |||||||| |||||||| || || Sbjct 5809 GCCGCCGTCGAGGGTATCTTTTTCAGCGGCAGTTTTTGCTCTATCTTTTGGCTCAAGAAA 5868 Query 133583 CGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTT 133642 |||||| | | || || || || |||||||| || || | ||||||| || Sbjct 5869 CGTGGTTTGATGCCCGGTTTGACATTCTCTAACGAGCTCATCAGTCGTGACGAGGGTCTC 5928 Query 133643 CACACCGAATTTGCC-GTTT 133661 ||| | | |||||| |||| Sbjct 5929 CACTGCAACTTTGCCTGTTT 5948 >seq291 Length=28774 Score = 138 bits (152), Expect = 3e-27 Identities = 204/287 (71%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 |||||| || |||||||||||| ||| || || || || |||||||| ||||| |||| Sbjct 24969 ACGACGTTGGATATAACCAGTTTCAGAGGTCTTGACGGCAGTATCAATGAGACCCTCACG 25028 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711 ||||||||||||||| ||||| | ||||| || || || | || | | ||| | || Sbjct 25029 ACCACCCATAGCATGAAAGAAAAACTCTTGAGGAGTGAGACCACGAAGATACGAGTTTTC 25088 Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 || ||||| | |||||| || ||| ||| || || || || || || ||||| Sbjct 25089 GACAAAACCTCTACTCTCGGGACCATAGTCATCCTTTGTGAAATGGGGAAGTGTTCTGTT 25148 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 | |||| | || | ||| || || || || || || || || | || | ||||| Sbjct 25149 TTGGAAGCCAAAGGGTACACGTTTACCTTCGACATTTTGTTGACCGACACAGGCCATCAT 25208 Query 302832 CTGCGAAATATT--TAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||| || ||||| ||||| | |||||||| |||||| ||||||| Sbjct 25209 CTGAGAGATATTAATAAATGA--ACCCTTGGAACCAGCAATTACCAT 25253 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923 ||||||||| | ||||||||||| | ||| | |||||| | ||||||||||||| |||| Sbjct 24193 ACACCAGCATAATGGAAAGTATTTAAAGTCATTTGAGTGGCTGGCTCACCAATAGATTGT 24252 Query 301924 GCCGCAATCATACCAACCATTTCTCCTGG 301952 || ||||| ||| |||||||| ||||| Sbjct 24253 GCAGCAATGGCACCGACCATTTCACCTGG 24281 >seq529 Length=15923 Score = 109 bits (120), Expect = 2e-18 Identities = 251/372 (67%), Gaps = 6/372 (2%) Strand=Plus/Plus Query 252316 TCATCCTTTTCGGTATGGTAAATCGTAGCCAGGAATAGACCACGGTCAATAGAACCCTTG 252375 ||||| || | || | | |||| | | | |||| |||||||| ||||||| || || Sbjct 12745 TCATCTTTATAGGCACGATAAAACATGGAACGGAAAAGACCACGATCAATAGCACTCTGA 12804 Query 252376 TTAAATAGGACACTATCCTCCTGATTATAACCAGAATGACTCATAATGGCTACAATAACT 252435 ||| | ||| ||| ||||||||||||||||||| | |||||||||| | | Sbjct 12805 CTAAGAATAACAGAATCTTCCTGATTATAACCAGAATATGTTGCAATGGCTACACAAGCA 12864 Query 252436 TGCTCGCCAGATGG-AATGGTATTGAGTTTGATAATA-TCCATAAGACGAGTATCAACAA 252493 | | |||| ||| ||| | | | || |||| |||||| |||||| ||| | Sbjct 12865 TTTTGACCAGCTGGTAAT--TCTCTAAAATGTAAATACTCCATAGAACGAGTGGTAACCA 12922 Query 252494 GCGGTCTCATCGGGTAAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAATTTG 252553 ||| | || ||| | | ||||| || | ||||||| | | | |||||||| Sbjct 12923 ATGGTTTTTGTGGATAAAACAAAACATGAGCCATTGTATCCATACGAAGTTGATAATTTG 12982 Query 252554 TAACATACATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACT 252613 ||| ||| | ||| | || || || ||||||||| || |||||||| | || || | Sbjct 12983 TAATATAAACACCCATAGCTTGTTTACCCATAGCAGCTTGATAAGTATTACGAGGTGATT 13042 Query 252614 GATTGTTTTCCGGGAAAGGAATGCATGATGCTAC-AACACCGAAGATAGTGCTTGGGTGA 252672 |||| | || || |||||||| ||| | || || ||| || || || ||| ||| Sbjct 13043 GATTATGATCTGGAAAAGGAAT-AATGGAACAACAAATACCTAAAATCATGGATGGATGA 13101 Query 252673 ATTTCACAGTGA 252684 |||||||| ||| Sbjct 13102 ATTTCACAATGA 13113 >seq171 Length=42127 Score = 105 bits (116), Expect = 2e-17 Identities = 258/382 (68%), Gaps = 13/382 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | |||| ||| ||| | || || ||||| | ||| || || || Sbjct 37522 CTATCAAATCTACCGGGACGAAGTAAGGCTTGATCCAAAATATCTGGTCTATTGGTGGCG 37463 Query 288910 GCCAATACAACAATAGATTCG-GTTT-GCTTAAATCCATCCATACTTGTTAAAATTTGAT 288967 || || || || | || | || | || ||| |||||||| || | ||||| Sbjct 37462 GCAAACACTACTACGTCTTTGAGTGTAGC--AAAACCATCCATTTCAACCAACAATTGAT 37405 Query 288968 T--AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttt 289025 | |||||||| || |||||||| || ||| || ||||| | || ||| Sbjct 37404 TCAAAGTGTTT--TCTCTTTCATCGTTGCTACCAGAGAAACCACCC---TTGCCTCTTGC 37350 Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 | |||||| ||||||||||| || || || | | ||| || | ||| | | | || Sbjct 37349 TCTACCAATGGCATCAATTTCATCGATAAACACAATACATGGTGCATTCTTTTTAGCTTG 37290 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 | |||||| || | ||| | | || || | ||||||||||||||| ||||| || || Sbjct 37289 TTCAAATAGATCACGTACTCTAGCTGGACCTACACCAACATACATTTCAACAAAATCTGA 37230 Query 289146 AGCGGATACTTG-AATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | || | ||| || ||||| ||| |||||||| ||||| ||| | || | | | Sbjct 37229 TCCAGA-AGTTGAAAAGAATGGTACGTTTGCTTCACCTGCAGTTGCTTTTGCTAATAAAG 37171 Query 289205 TCTTACCTGTTCCAGGTGGTCC 289226 | |||||||| || ||||| || Sbjct 37170 TTTTACCTGTACCTGGTGGACC 37149 >seq240 Length=34538 Score = 100 bits (110), Expect = 8e-16 Identities = 159/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||| || | ||||||||| || || || | | ||| |||||||| | ||| || | | Sbjct 32910 ACCCACTGAATCAATTTCATCGATAAATACAATACAGGGAGAATTCTTTCTTGCCGCTTC 32851 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | ||||||||||| || |||||||| ||| |||||||| ||||||| || | Sbjct 32850 AAAGAGCTCTCTTACACGCTTGGCACCAAGACCTACAAACATTTCTTCAAATTCTGAGCC 32791 Query 289149 --GGATACTTGAATGAATGT-TACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 |||| | || ||||| ||| || |||||||| | || | |||| ||||| Sbjct 32790 ATTGATA-TAGAGGAAATGTGTAC--CAGCCTCGCCTGCCAAAGCTTTGGCCAACAGTGT 32734 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 ||||||||| || ||||| ||| | || | || | ||||||| Sbjct 32733 CTTACCTGTACCTGGTGGGCCCACCAACA-AAATACCTTTGG 32693 >seq2 Length=160969 Score = 95.1 bits (104), Expect = 4e-14 Identities = 372/577 (64%), Gaps = 20/577 (3%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCA 155645 ||||||| |||| ||| || || || |||| || || | |||||| || || || Sbjct 39117 CAATAGAGGCCAAATTGCAAACGGCCACTTCCTCTGGCGAGG-TGTATTGGACGATTTCT 39059 Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705 ||| ||||| || |||||||| | || | || || ||||| || || Sbjct 39058 GTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGATTTTGAATTGCAG 38999 Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGC 155765 ||||| ||||| || ||| ||||||| || || || || || || || ||||| | | Sbjct 38998 GCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTCGAGAATGGCAAAC 38939 Query 155766 CAGAGGTCACGGGCATTAATTT---GCTTGTTGT-ATCTGCCTTCCGACTCATATTTCAT 155821 |||||||| |||| || || ||||| ||||| | | || |||| | Sbjct 38938 CAGAGGTCTTGGGCTTTGATCACACGCTTGGCAAGATCTGGTGTG-GCTTCGTATTGGAG 38880 Query 155822 ATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCA 155881 ||| || ||| | || || | | || || || |||||| | | ||| || Sbjct 38879 ATAGAGTTTTCTAAACTCTTCGCTATGGCACTCGGCCAAGCCAGGGGCTTCGTTGGGACA 38820 Query 155882 AAACAGCGACCAAA-----TTTTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936 ||| || |||||| |||| | ||| | | |||||||| | ||||| || Sbjct 38819 AAAGAGGGACCAATCGGCGTTTTGCT--CGACT---CTTTCCATAAAGAGGTCACTGACC 38765 Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGC 155996 || | || || || ||||| || || | ||||| | |||||| ||||| | Sbjct 38764 CAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTTCTTTTTCAAA 38705 Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTC 156056 || | || || |||||| | || |||||||| || | ||||| ||| || Sbjct 38704 TCGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAAGGCACCCTTT 38645 Query 156057 CTCTTGCCA---CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113 ||||||||| || || || || || | ||||| | ||| ||||||| ||||| || Sbjct 38644 CTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAGCATGGGG 38585 Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 | |||||| ||||| ||||| ||||| || || |||| Sbjct 38584 ACAATACCGTTGGATGTGCCGTTGGTGCCACGGATAT 38548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471794442789836