Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq697 145 9e-29 seq2 136 5e-26 >seq697 Length=10231 Score = 145 bits (160), Expect = 9e-29 Identities = 204/285 (72%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| |||||||| | ||||| || | | |||||||| | || || || Sbjct 5925 ACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTCAAACCGGGCATCAAACCACGTTT 5866 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||||||||| | ||| |||||||| ||||||||| ||||||||||||||||| Sbjct 5865 CTTGAGCCAAAAGATAGAGCAAAAACTGCCGCTGAAAAAGATACCCTCGACGGCGGCAAA 5806 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | | | || |||||||| | | | || ||| ||||||| ||| ||||| Sbjct 5805 GGCAACTAAACGTTCGGCAAATGATTTG-----CT-GTTGGTGATCCATCTCAATGCCCA 5752 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||||||||| || |||| | || | || ||||||||| || || | | |||||| Sbjct 5751 GTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGATGGCGTTGAATAGTTTGCTCTTTTC 5692 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| | || ||||||||||||| ||| |||||||| Sbjct 5691 CACGCTGTCTTGGATGTAGGTGTCGATCAAGAGACTGTAGGTCTC 5647 >seq2 Length=160969 Score = 136 bits (150), Expect = 5e-26 Identities = 188/263 (71%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||| | || ||||| |||||||| || |||||||| || | |||||||| Sbjct 38629 TGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAGCATGGGGACAATACCGTTGGAT 38570 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||||||||| | || || | ||| | | |||||| ||| | || Sbjct 38569 GTGCCGTTGGTGCCACGGATATAACTGCTGCTGGCTCTGATCTTGTGACAGGCGATACCA 38510 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| ||||| || || |||||| || ||||||||||| ||||| ||||| || || Sbjct 38509 ATGCCACCGGCAGATTTACTGATGAGGGCACACTGTTTGAGAGTGTCATAGATACCGTCT 38450 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 |||||||| ||||||| | |||||| || || || | || |||| | || || Sbjct 38449 ATCGAGTCTTCCTTCATTTGCACGAGGAAACAACTTGACATCTGAGGGTTGGGTGTACCC 38390 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGC 1630328 | ||| ||||| ||||| || || Sbjct 38389 GAGTTAAAGAGGGTGGGGGTGGC 38367 Score = 134 bits (148), Expect = 2e-25 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 1628379 GCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCAC 1628438 ||||||| || ||| || || ||| ||||||||||| ||||| ||| | | | Sbjct 38852 GCACTCGGCCAAGCCAGGGGCTTCGTTGGGACAAAAGAGGGACCAATCGGCGTTTTGCTC 38793 Query 1628439 CGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTT 1628498 | | |||||||||||||| ||| || |||||||||||||| | || | | Sbjct 38792 GACTCTTTCCATAAAGAGGTCACTGACCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCAT 38733 Query 1628499 CTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGG 1628558 ||||| ||||||||||||||||| | |||| | || | ||| ||||||||||| || Sbjct 38732 TTCCTCTTTGCCGTGGTTCTTTTTCAAATCGATAAACTCAAAAATATCGGCGTGCCATGG 38673 Query 1628559 CTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||| |||| ||||||||| ||||| | |||||| ||||| Sbjct 38672 CTCCAAGTAGACGGCAAAGGCACCCTTTCTCTTGCCACCGCC 38631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107038424569276