Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq16 123 3e-23 seq329 120 4e-22 seq529 95.1 2e-14 >seq16 Length=97561 Score = 123 bits (136), Expect = 3e-23 Identities = 324/488 (66%), Gaps = 10/488 (2%) Strand=Plus/Plus Query 90729 TATTCCTTTTATTGACACATCAATAAATGCTGTTTGGGATGATTGGCAAAATTATCCCAA 90788 ||| ||||||||||| ||| | ||||| | ||| |||||||||| ||||||| | Sbjct 8212 TATGCCTTTTATTGATGTATCTGTGAATGCCGAATGGAGTGATTGGCAACATTATCCAGA 8271 Query 90789 TGGTAGACCAAACCCTTTATATGCAAAACAAG-CAGAAATGTGGGGTGTAGATGGTTTAA 90847 |||||||||||| || | ||| | |||||| || || | | | ||||||||| Sbjct 8272 TGGTAGACCAAATCCAATTTATTCTCAACAAGTCATTGAT-TATAATCTTGATGGTTTAG 8330 Query 90848 TTTTTGGTTTTATTACTTTATCAGCTaaaaaaaaaGCATGTTGGGCTGCACAAGATACTA 90907 | |||||||| |||||| |||| | ||| | || || |||||||| ||| | | Sbjct 8331 TCTTTGGTTTCATTACTCTATCTACATCAAACACTGCTTGCTGGGCTGCTCAACCCAAAA 8390 Query 90908 TGCCTTTAAATTGGTCTTTACCTTTGGCCAAAGAACTTGCTTTAGT-TAAAAAAGAAACA 90966 ||||| | |||||| || | || |||| | || | | | ||| || ||| || | Sbjct 8391 TGCCTCTCAATTGGGCTCTTCCATTGG-CTCAGGATATCCAAAAGTCCAATAAAAAAGTA 8449 Query 90967 ATTGTTTCTTTTGGTGGAGCAAGTAATCCAGATATTTCATCTGAATTTTCAATAGATGAA 91026 || || || |||||||| ||| ||| ||||||| || |||| | | ||| || Sbjct 8450 ATCGTATCATTTGGTGGTGCATCAAATAGAGATATTAGCACTCAATTCACTGTTGATCAA 8509 Query 91027 CTTATTCAAACATATCTTGATGTTATTGAAATGTACAACCCATCTGGGTTGGATTTTGAC 91086 | | | || ||| | | || |||||||||| | | ||| ||||||||||| Sbjct 8510 TTGGTAGATACCTATAATCAAACCATCACAATGTACAACGCCTATGGCTTGGATTTTGAT 8569 Query 91087 CTTGAAAACGGGTTGTATAATGCAGATAAAATTTCTTCAGCACTTTCTGT---TGTAAAG 91143 | ||||| || || || ||| || || |||| | ||| || || ||| | Sbjct 8570 TTGGAAAATGGATTATACAATATTGACAATATTTGTGGAGC---TTTGGTCAAAGTAGTG 8626 Query 91144 TCAAAATATCCCGAATGTAATATTTCCTTAACACTACCAACAATGCCAACTGGTTTAACA 91203 ||| |||| | ||| || || || || || ||||||||||| |||||||| Sbjct 8627 GCAAGCAATCCATCAATTAAAATCTCATTCACCCTTCCAACAATGCCCGAGGGTTTAACT 8686 Query 91204 AATGTTGG 91211 | || ||| Sbjct 8687 AGTGCTGG 8694 >seq329 Length=25976 Score = 120 bits (132), Expect = 4e-22 Identities = 319/480 (66%), Gaps = 12/480 (3%) Strand=Plus/Plus Query 90729 TATTCCTTTTATTGACACATCAATAAATGCTGTTTGGGATGATTGGCAAAATTATCCCAA 90788 ||| ||||||||||| | | ||||| | ||| |||||||||||||||||| | Sbjct 22646 TATGCCTTTTATTGATGTTACTGTGAATGCAGAATGGAGTGATTGGCAAAATTATCCAGA 22705 Query 90789 TGGTAGACCAAACCCTTTATATGCAAAACAAG-CAGAAATGTGGGGTGTAGATGGTTTAA 90847 ||||||||||| || | ||| | |||||| || || | | |||||||||| | Sbjct 22706 AGGTAGACCAAATCCAATTTATTCTCAACAAGTCATTGAT-TATAATCTAGATGGTTTGA 22764 Query 90848 TTTTTGGTTTTATTACTTTATCAGCTaaaaaaaaaGCATGTTGGGCTGCACAAGATACTA 90907 || ||||||| || ||| |||| | ||| | || ||||||||| | ||| || | Sbjct 22765 TTCTTGGTTTCATCACTCTATCTACATCAAACACTGCTTGTTGGGCTTCTCAACCCACAA 22824 Query 90908 TGCCTTTAAATTGGTCTTTACCTTTGGCCAAAGAACTTGCTTTAGTTAAA-AAAGAAACA 90966 ||| | | ||||| | |||| ||||| ||| | | | ||||||| ||| || | Sbjct 22825 TGCATCTCGATTGGGCACTACCATTGGCTGAAG-ATATCCAAAAGTTAAATAAAAAAGTA 22883 Query 90967 ATTGTTTCTTTTGGTGGAGCAAGTAATCCAGATATTTCATCTGAATTTTCAATAGATGAA 91026 || || || |||||||| ||| ||| || ||| | |||| || | ||||| Sbjct 22884 ATCGTATCATTTGGTGGTGCATCAAATAGTGACATTAGCACAAAATTCTCTGTTGATGAT 22943 Query 91027 CTTATTCAAACATATCTTGATGTTATTGAAATGTACAACCCATCTGGGTTGGATTTTGAC 91086 | | || || ||| | | ||| ||||||||| ||| ||| ||||||||||| Sbjct 22944 TTGGTACACACCTATAATCAAACTATCACAATGTACAATGCATATGGATTGGATTTTGAT 23003 Query 91087 CTTGAAAACGGGTTGTATAATGCAGATAAAATTTCTTCAGCACTTTCTGTTGTAA--AGT 91144 | || || || || || ||| ||| || || | | ||| | || | || ||| Sbjct 23004 TTGGAGAATGGATTATACAATATAGACAATATATGTGAAGC----TTTGGTAAAAGTAGT 23059 Query 91145 --CAAAATATCCCGAATGTAATATTTCCTTAACACTACCAACAATGCCAACTGGTTTAAC 91202 ||| |||| | || || || || ||||||||||||||||| |||||||| Sbjct 23060 AGCAAGCAATCCATCAATTAGAATCTCATTCACACTACCAACAATGCCCGAGGGTTTAAC 23119 >seq529 Length=15923 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/189 (73%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 194236 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAACTTGTGG 194294 ||| ||||| |||| || ||||| || | ||| | |||| |||||| || || ||||| Sbjct 12416 CGTGTACCTCAAATTGGTGATAAGTTCTCTTCTCGTCATGG-TCAAAAGGGTACCTGTGG 12358 Query 194295 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 194354 |||| |||| ||||||||| | || || || | |||| | |||||||||||||| Sbjct 12357 TATGGCTTATCGTCAAGAAGATTTACCTTTCACTGTTGAAGGTGTCGTACCAGATATTAT 12298 Query 194355 TATCAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTGCTACTGT-TA 194413 | | ||||| || |||||| || | ||||| ||| |||| | |||| | ||| || Sbjct 12297 TGTAAATCCTCATGCTATTCCATCTCGTATGACTATTGGTCAATTGATTG--AATGTCTA 12240 Query 194414 -TGGGTAAA 194421 |||||||| Sbjct 12239 TTGGGTAAA 12231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632479891284640