Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1179 114 1e-20 seq79 111 1e-19 seq57 104 2e-17 seq298 84.2 2e-11 >seq1179 Length=2421 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||||| || || ||||| || ||| | ||| || | | Sbjct 2203 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACTATCACCCTTGAAGTTGAAGGTTCC 2262 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| || ||| || |||||||| | || |||||| Sbjct 2263 GATACAATTGATAATGTTAAAACTAAAATTCAAGATAAAGAAGGTATTCCACCCGATCAA 2322 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||||||||||| ||| |||||||| |||| |||| ||||| | | || || ||| Sbjct 2323 CAAAGACTTATTTTTGCAGGTAAACAATTGGAAGATGGTAGAACCTTATCTGACTATAAC 2382 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACT 110490 |||||||||||||| || | ||| |||| | ||||| Sbjct 2383 ATTCAAAAAGAATCCACTCTTCACTTGGTACTTAGACT 2420 >seq79 Length=61457 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAA-ACGG 110324 ||||| ||||||||| ||||| ||||||||||| ||||||||||| ||| | ||| || Sbjct 11216 ATTTATAATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGA 11157 Query 110325 AGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCG 110384 || || |||||| | | | ||||| || ||| ||||||||||| | || Sbjct 11156 AGGCT-CTGATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCAC 11098 Query 110385 TGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGG 110444 ||||||||| | | || | ||| |||||||| | || |||| ||||| | | | Sbjct 11097 CCGATCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTG 11038 Query 110445 ATTACAACATTCAAAAAGAATCTAC 110469 | |||||||| ||||||||||| || Sbjct 11037 ACTACAACATCCAAAAAGAATCCAC 11013 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTGA 110331 |||||||| || |||||||||||||| || |||||||| ||| | ||| || | || Sbjct 10753 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 10694 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | ||||| || ||| ||||||||||| | || ||||| Sbjct 10693 -GATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCA 10635 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||||| |||| || |||||||| | || || | | || | | || ||||| Sbjct 10634 ACAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACAA 10575 Query 110452 CATTCAAAAAGAATCTAC 110469 ||| |||||||||||||| Sbjct 10574 CATCCAAAAAGAATCTAC 10557 >seq57 Length=71319 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| |||||| | || || |||||||||||| | ||| || | Sbjct 44326 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACCCTTGAAGTCGAAGGTTCT 44267 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || |||||| || || ||||| | || |||||| Sbjct 44266 GATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 44207 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||||||||||| ||| |||||||| | || |||| ||||| | | || ||||| Sbjct 44206 CAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAT 44147 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||||||||| || Sbjct 44146 ATTCAAAAAGAATCCAC 44130 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| || ||||| || || || || ||||||||||| | ||| || || || | Sbjct 44098 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGCTCA 44039 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | || || |||||| ||||||||||| | || ||||| Sbjct 44038 -GACACTATTGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCA 43980 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| | | |||| || |||||||| | || |||| ||||| | | |||||||| Sbjct 43979 ACAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGATTACAA 43920 Query 110452 CATTCAAAAAGAATCTAC 110469 ||| ||||||||||| || Sbjct 43919 CATCCAAAAAGAATCCAC 43902 >seq298 Length=27992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | ||| ||||||||||||||||| | ||| |||||||| | || Sbjct 13308 GACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACAATTAGAA 13249 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 || | | || | | ||||||||||| |||||||||||||| | ||| | || | Sbjct 13248 GACGGTCGTACTTTATCCGATTACAACATCCAAAAAGAATCTACCCTTCACTTAGTCCTC 13189 Query 110486 AGACTGCGAGGGGG 110499 ||||| |||| || Sbjct 13188 AGACTCAGAGGTGG 13175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412835421309404