Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq697 192 9e-43 seq2 125 1e-22 >seq697 Length=10231 Score = 192 bits (212), Expect = 9e-43 Identities = 243/330 (74%), Gaps = 12/330 (4%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAG-CAGAGGCCGGGCATGAGGCCGCGC 794397 ||| ||||| |||||||| | ||||| | || | || | |||||||| | || || Sbjct 5925 ACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTCAAA--CCGGGCATCAAACCACGT 5868 Query 794398 TTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457 ||||||||||||||||| | || |||||||| ||||||||| ||||||||||||||| Sbjct 5867 TTCTTGAGCCAAAAGATAGAGCAAAAACTGCCGCTGAAAAAGATACCCTCGACGGCGGCA 5808 Query 794458 AAGCCGACGAGCCGCTCGGCAAAAG-TGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 ||| | || | || |||||||| | | | | | ||| ||||||| ||| || Sbjct 5807 AAGGCAACTAAACGTTCGGCAAATGATTTGCTG-------TTGGTGATCCATCTCAATGC 5755 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || ||||| || |||| |||| | || ||||||||| || || | | ||| Sbjct 5754 CCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGATGGCGTTGAATAGTTTGCTCTT 5695 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || || ||| | || |||||||||||| | ||| |||||||||||| |||||||| Sbjct 5694 TTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGACTGTAGGTCTCTGAATGGATGTT 5635 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| ||||| || ||||||||||| || || Sbjct 5634 TTCAATGGCAATTTGGAAGCCATAGAAACA 5605 >seq2 Length=160969 Score = 125 bits (138), Expect = 1e-22 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 2071789 TGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTC 2071848 ||||||||| || ||| || || ||| || |||||||| ||||| ||| || | Sbjct 38854 TGGCACTCGGCCAAGCCAGGGGCTTCGTTGGGACAAAAGAGGGACCAATCGGCGTTTTGC 38795 Query 2071849 ACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGG 2071908 | || | |||||| ||||| | ||| ||| |||||||||| || | || | Sbjct 38794 TCGACTCTTTCCATAAAGAGGTCACTGACCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTC 38735 Query 2071909 TTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCAC 2071968 | ||||| ||||||||||||||||||| |||| | || | | ||||||||||| Sbjct 38734 ATTTCCTCTTTGCCGTGGTTCTTTTTCAAATCGATAAACTCAAAAATATCGGCGTGCCAT 38675 Query 2071969 GGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||||| |||| ||||||||| ||||| | |||||| ||||| Sbjct 38674 GGCTCCAAGTAGACGGCAAAGGCACCCTTTCTCTTGCCACCGCC 38631 Score = 98.7 bits (108), Expect = 2e-14 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| || | || ||||| |||||||| || |||||||| |||| |||||||| Sbjct 38629 TGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAGCATGGGGACAATACCGTTGGAT 38570 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 |||||||||||| | || || ||| | | |||||| ||| | || Sbjct 38569 GTGCCGTTGGTGCCACGGATATAACTGCTGCTGGCTCTGATCTTGTGACAGGCGATACCA 38510 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| ||||| | || |||||| || |||| ||| || || || ||||| || || Sbjct 38509 ATGCCACCGGCAGATTTACTGATGAGGGCACACTGTTTGAGAGTGTCATAGATACCGTCT 38450 Query 2073721 ATCGAGTCGGCCTTCAT 2073737 |||||||| ||||||| Sbjct 38449 ATCGAGTCTTCCTTCAT 38433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916115772039092