Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq79 86.0 4e-12 >seq79 Length=61457 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||| || || | || ||||| | || | ||| ||||| |||||||||||||| Sbjct 10068 TTTCCACCTCTAAGTCTGAGGACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAGTCA 10127 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 |||| | || | || || | ||| || |||||||| || |||| ||| || || | Sbjct 10128 GATAAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGT 10187 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGT-TTGACGGATGCTATCGATTCATTGGCCTC 34926 || | || ||||| || || | | ||||| || ||| | | || | ||| | | || Sbjct 10188 GGGATACCTTCCTTATC-TTGAATCTTTGTCTTAACGTTTTCAATGGTATCAGAGCCTTC 10246 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| |||| ||| || ||||| || || | ||| || || || || ||||| Sbjct 10247 GACTTCAAGGGTAATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325687925600132