Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1179 105 5e-18 seq79 98.7 8e-16 seq57 95.1 1e-14 >seq1179 Length=2421 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| ||||| || || ||||| || ||| | ||| || | | | Sbjct 2203 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACTATCACCCTTGAAGTTGAAGGTTCC 2262 Query 107616 GATACTGTCGGCCA-GGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | |||||| ||| ||| ||||||||||| | || ||||| Sbjct 2263 GATACAATTGATAATGTTAAAACTAAA-ATTCAAGATAAAGAAGGTATTCCACCCGATCA 2321 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || |||||||||| ||| |||||||| |||| || | | ||| | | ||||| || Sbjct 2322 ACAAAGACTTATTTTTGCAGGTAAACAATTGGAAGATGGTAGAACCTTATCTGACTATAA 2381 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||| || || || | ||| |||| Sbjct 2382 CATTCAAAAAGAATCCACTCTTCACTTGGT 2411 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGA-GGCTG 107613 |||||||||||| || ||||| ||||| || |||||||| ||| | ||| || |||| Sbjct 1974 AATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTC 2033 Query 107614 GCGATACTGTCGGCCAGGTAAA-ACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | || || || ||| ||| ||||||||||| | || ||| Sbjct 2034 T-GATACAATTGATAACGTCAAGACTAAA-ATTCAAGATAAAGAAGGTATCCCACCCGAT 2091 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || || | | || | ||| |||||||| |||| |||| | ||| || | |||||| Sbjct 2092 CAACAACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGACTAC 2151 Query 107733 AACATTCAAAAGGAGTCTAC 107752 ||||||||||| || || || Sbjct 2152 AACATTCAAAAAGAATCCAC 2171 >seq79 Length=61457 Score = 98.7 bits (108), Expect = 8e-16 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAA-ACGGA 107608 |||| ||||||||||||||| ||||||||||| ||||||||||| ||| | ||| || | Sbjct 11215 TTTATAATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAA 11156 Query 107609 GGCTGGCGATACTGTCGGCCAGGTAAA-ACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667 |||| |||||| | | | ||||| || ||| ||| || |||||||| | || Sbjct 11155 GGCT-CTGATACTATTGAAAATGTAAAGACTAAA-ATTCAAGACAAAGAAGGTATCCCAC 11098 Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGG 107727 ||||| || | | || | ||| |||||||| | || || | | ||| | | | Sbjct 11097 CCGATCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTG 11038 Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||| ||||| || || || | || |||| | ||||| |||| || Sbjct 11037 ACTACAACATCCAAAAAGAATCCACTCTTCATTTGGTCCTTAGATTAAGAGGTGG 10983 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAA-ACGGAGGCTGG 107614 ||||||||||| |||||||||||||| || |||||||| ||| | ||| | ||||| Sbjct 10753 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCT-C 10695 Query 107615 CGATACTGTCGGCCAGGTAAA-ACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| | | | ||||| || ||| ||| || |||||||| | || |||| Sbjct 10694 TGATACTATTGAAAATGTAAAGACTAAA-ATTCAAGACAAAGAAGGTATCCCACCCGATC 10636 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | || ||||| |||| || |||||||| | || |||| || | | ||||||| Sbjct 10635 AACAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACA 10576 Query 107734 ACATTCAAAAGGAGTCTAC 107752 |||| ||||| || ||||| Sbjct 10575 ACATCCAAAAAGAATCTAC 10557 >seq57 Length=71319 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| |||||| | || || |||||||||||| | ||| || | | Sbjct 44326 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACCCTTGAAGTCGAAGGTTCT 44267 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || |||||| ||||| ||||| | || ||||| Sbjct 44266 GATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 44207 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || |||||||||| ||| |||||||| | || || | | ||| | | |||||||| Sbjct 44206 CAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAT 44147 Query 107736 ATTCAAAAGGAGTCTAC 107752 |||||||| || || || Sbjct 44146 ATTCAAAAAGAATCCAC 44130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398870830310092