Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq79 181 2e-40 seq1179 179 6e-40 seq57 168 1e-36 seq778 132 8e-26 seq298 132 8e-26 >seq79 Length=61457 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| ||||| || ||||| || || |||| || ||| | Sbjct 10752 TGCAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCTG 10693 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| |||||||||| | |||||| ||| |||||||| || ||||||||||||| Sbjct 10692 ATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAAC 10633 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||||||||| || |||||||||||||| || | | || ||| | || || || | Sbjct 10632 AAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACAACA 10573 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| |||||||||| | || | ||||| |||| Sbjct 10572 TCCAAAAAGAATCTACTCTCCATTTAGTTCTCAGACTCAGAGGTGGTA 10525 Score = 172 bits (190), Expect = 9e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||| || ||||| || || |||| || ||| | Sbjct 11208 TGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAAGGCTCTG 11149 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| |||||||||| | |||||| ||| |||||||| || ||||||||||||| Sbjct 11148 ATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAAC 11089 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| |||||||||||||| ||| |||||| ||| | || || || | Sbjct 11088 AACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGACTACAACA 11029 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | ||||| || | |||||||||| |||| Sbjct 11028 TCCAAAAAGAATCCACTCTTCATTTGGTCCTTAGATTAAGAGGTGGTA 10981 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| || || || ||||| |||||| |||| || ||| | | Sbjct 10524 TGCAAATTTTCGTCAAAACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGTTCAG 10465 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| |||| |||||| ||| |||||||| |||||||||||||||| Sbjct 10464 ACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATTCCACCCGATCAAC 10405 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||| ||||| || ||| | | || ||| | ||||| || | Sbjct 10404 AACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTATCTGATTACAACA 10345 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| |||||||||| | || | ||||| |||| Sbjct 10344 TCCAAAAAGAATCTACTCTCCATTTAGTCCTCAGACTCAGAGGTGGTA 10297 Score = 156 bits (172), Expect = 7e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| || || || || || ||||| |||| || ||| | Sbjct 10296 TGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACCCTTGAAGTCGAAGGCTCTG 10237 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| || || | || || ||| ||| ||||| || ||||||||||||| Sbjct 10236 ATACCATTGAAAACGTTAAGACAAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAAC 10177 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||||||||| || |||||||||||||| || | | || ||| | || ||||| | Sbjct 10176 AAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAACA 10117 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 | ||||| ||||| ||| |||||||||| | || | ||||| || || |||| Sbjct 10116 TTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGACTTAGAGGTGGAAACTAAA 10063 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| || || || || || |||||| |||| || ||| | | Sbjct 10980 TGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACTCTTGAAGTCGAAGGTTCAG 10921 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| || || | || || ||| |||||||| || ||||||||||||| Sbjct 10920 ACACCATTGAAAACGTTAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAAC 10861 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| |||||||||||||| ||| |||||| ||| | || || || | Sbjct 10860 AACGTTTAATTTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAACA 10801 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | |||||||| | || | ||||| |||| Sbjct 10800 TCCAAAAAGAATCTACTCTTCATTTAGTCCTCAGACTTAGAGGTGGTA 10753 >seq1179 Length=2421 Score = 179 bits (198), Expect = 6e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || || || ||||| || || |||| || ||| | || Sbjct 2204 TGCAAATTTTTGTCAAGACTTTGACTGGTAAAACTATCACCCTTGAAGTTGAAGGTTCCG 2263 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| |||| |||||| ||| ||||||||| |||||||||||||||| Sbjct 2264 ATACAATTGATAATGTTAAAACTAAAATTCAAGATAAAGAAGGTATTCCACCCGATCAAC 2323 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||||||||||||||| || ||| |||||| ||| | || ||||| | Sbjct 2324 AAAGACTTATTTTTGCAGGTAAACAATTGGAAGATGGTAGAACCTTATCTGACTATAACA 2383 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 | ||||||||||| ||| | || || ||| Sbjct 2384 TTCAAAAAGAATCCACTCTTCACTTGGTA 2412 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| ||||| || ||||| || || |||| || ||| | Sbjct 1976 TGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCTG 2035 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || || | |||||| ||| ||||||||| || ||||||||||||| Sbjct 2036 ATACAATTGATAACGTCAAGACTAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAAC 2095 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||||||||||||||| || || |||||| || | || || || | Sbjct 2096 AACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGACTACAACA 2155 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | |||||||| | |||||||||| |||| Sbjct 2156 TTCAAAAAGAATCCACTCTTCATTTAGTTCTCAGATTAAGAGGTGGTA 2203 >seq57 Length=71319 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || ||||| ||||| |||| || ||| | | Sbjct 44325 TGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACCCTTGAAGTCGAAGGTTCTG 44266 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| || | || || ||| ||| ||||| || ||||||||||||| Sbjct 44265 ATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAAC 44206 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| |||||||||||||| ||| |||||| ||| | || || |||| Sbjct 44205 AAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAATA 44146 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | |||||||| | || | ||||| |||| Sbjct 44145 TTCAAAAAGAATCCACTCTTCATTTAGTCCTCAGACTCAGAGGTGGTA 44098 Score = 163 bits (180), Expect = 4e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || || || || || |||||| |||| || ||| | | Sbjct 43869 TGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACTCTTGAAGTTGAAGGTTCTG 43810 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| || |||| || || ||| |||||||| |||||||||||||||| Sbjct 43809 ATACCATTGAAAACGTTAAAACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAAC 43750 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||| || |||||||||||||| || | | || ||| | || ||||| | Sbjct 43749 AAAGACTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAACA 43690 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || |||||||||| | || | ||||| |||| Sbjct 43689 TCCAAAAAGAATCTACCCTCCATTTAGTCCTCAGACTCAGAGGTGGTA 43642 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || || || ||||| |||||| |||| || ||| | Sbjct 44097 TGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGCTCAG 44038 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| |||| || || | || || ||| |||||||| |||||||||||||||| Sbjct 44037 ACACTATTGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAAC 43978 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || |||||||||||||| ||| |||||| ||| | ||||| || | Sbjct 43977 AACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGATTACAACA 43918 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | |||||||| | || | ||||| |||| Sbjct 43917 TCCAAAAAGAATCCACTCTTCATTTAGTTCTTAGACTTAGAGGTGGTA 43870 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || ||||| |||||| |||| |||||| | Sbjct 43641 TGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACTCTTGAAGTAGAAGGCTCAG 43582 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| |||| |||||| ||| |||||||| || ||||||||||||| Sbjct 43581 ACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAAC 43522 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||||||||| || ||| | | || ||| | || || || | Sbjct 43521 AACGTTTAATCTTTGCTGGTAAACAATTGGAGGATGGTCGTACTTTATCTGACTACAACA 43462 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| ||| |||||||||| | || | ||||| |||| Sbjct 43461 TCCAAAAGGAATCTACTCTCCATTTAGTTCTTAGACTCAGAGGTGGTA 43414 Score = 143 bits (158), Expect = 4e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || || || ||||| ||||| |||| || ||| | Sbjct 43185 TGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACCCTTGAAGTCGAAGGCTCTG 43126 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||| || || | || || ||| |||||||| |||||||||||||||| Sbjct 43125 ATACCATCGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAAC 43066 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| |||||||||||||| || | | || ||| | || ||||| | Sbjct 43065 AACGTTTAATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAACA 43006 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 | ||||| ||||| || |||||||||| | || | ||||| ||||| |||| Sbjct 43005 TCCAAAAGGAATCTACCCTCCATTTAGTTCTCAGACTCAGAGGTGGTAACTAAA 42952 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || || || || || ||||| | || || ||| | | Sbjct 43413 TGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACCCTCGAAGTCGAAGGTTCTG 43354 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| || | || || ||| ||| ||||| || ||||||||||||| Sbjct 43353 ATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAAC 43294 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || |||||||||||||| ||| | || || | ||||| |||| Sbjct 43293 AACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGACGTACCTTGTCTGATTACAATA 43234 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| |||||||||| | || | ||||| |||| Sbjct 43233 TCCAAAAAGAATCTACTCTCCATTTAGTTCTTAGACTTAGAGGTGGTA 43186 >seq778 Length=8042 Score = 132 bits (146), Expect = 8e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| ||||| || || || || ||| | || || ||| | | Sbjct 4917 TGCAAATCTTCGTTAAAACCTTAACTGGTAAGACCATCACTCTCGAAGTCGAAGGTTCTG 4858 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || || || || ||| |||||||| || ||||||||||||| Sbjct 4857 ACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAAC 4798 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| |||||||||||||| ||| |||||| ||| | || || || | Sbjct 4797 AACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAACA 4738 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || |||| ||||| | || | ||||| |||| Sbjct 4737 TCCAAAAAGAATCAACCCTCCACTTAGTTCTCAGACTTAGAGGTGGTA 4690 >seq298 Length=27992 Score = 132 bits (146), Expect = 8e-26 Identities = 166/227 (73%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 146035 AAATATTCATAAAAACATTA---ACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | | || | | ||| ||||| ||||| | || || ||| | || Sbjct 13400 AAATATTAATATAGATATAATAAATAGGTAAAACTATTACCCTCGAAGTTGAAGGTTCCG 13341 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| || |||||| ||| |||||||| || || |||||||||| Sbjct 13340 ATACCATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCCGATCAAC 13281 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||| |||||||||||||| || | | || ||| | ||||| || | Sbjct 13280 AAAGACTTATCTTTGCTGGTAAACAATTAGAAGACGGTCGTACTTTATCCGATTACAACA 13221 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | ||||||||||| || | || ||||| | || | ||||| ||| Sbjct 13220 TCCAAAAAGAATCTACCCTTCACTTAGTCCTCAGACTCAGAGGTGGT 13174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786154332345760