Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq79 176 3e-39 seq1179 156 3e-33 seq57 147 2e-30 seq778 132 4e-26 seq298 118 8e-22 >seq79 Length=61457 Score = 176 bits (194), Expect = 3e-39 Identities = 172/219 (79%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||||||||| |||||||||||||| ||||| || || | | ||| | | ||| Sbjct 10998 AGGACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAGGTTCTACCATCT 11057 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || ||| | || || | ||| ||||| || || ||||| ||||||||| Sbjct 11058 TCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCT 11117 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||| || || ||| |||| | ||| ||||| ||| |||||||| || || || Sbjct 11118 TG-AATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACTTCAAGGGTGATGGT 11176 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 |||||||||||| ||||||||||| || |||||| |||| Sbjct 11177 TTTGCCAGTTAAAGTTTTAACAAAAATTTGCATTATAAA 11215 Score = 156 bits (172), Expect = 3e-33 Identities = 164/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || || ||||||||||| ||||| ||||| | | || ||| ||| Sbjct 10314 AGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGATAAAGTACGACCATCT 10373 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | ||| || |||||| | || || | ||| ||||| || |||||||| ||||||||| Sbjct 10374 TCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCT 10433 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||| | ||| ||| |||| | ||||| ||| ||| ||||||||||| || || Sbjct 10434 TG-AATTTTAGTTTTAACATTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATGGT 10492 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| |||||||| || || || ||||| Sbjct 10493 TTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10525 Score = 138 bits (152), Expect = 9e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || || ||||||||||| ||||| || || | | || ||| || Sbjct 10542 AGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTACGACCGTCT 10601 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || || | || | |||||| ||||| || || ||||| ||||||||| Sbjct 10602 TCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCT 10661 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||| || || ||| |||| | ||| ||||| ||| |||||||| || || || Sbjct 10662 TG-AATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCAACTTCAAGGGTGATGGT 10720 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| ||||| || || || ||||| Sbjct 10721 TTTACCAGTTAAAGTTTTGACGAAAATTTGCAT 10753 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || |||||||| || ||||||||||| ||||| || || | | || | | ||| Sbjct 10770 AGGACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCT 10829 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || ||| | || || | ||| ||||| || || ||||| ||||||||| Sbjct 10830 TCTAATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCT 10889 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || || || || || || |||| | ||||| ||| ||| ||||||||||| ||||| Sbjct 10890 TG-GATCTTGGTCTTAACGTTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATAGT 10948 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| |||||||| || || || ||||| Sbjct 10949 CTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10981 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || |||||||| |||||||||||||| || | | || ||| || Sbjct 10086 AGGACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAGTCAGATAAAGTACGACCGTCT 10145 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || || | || | |||||| ||||| || || ||||| || || ||| Sbjct 10146 TCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCT 10205 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| ||||| || || |||| | || ||||| ||| |||||||| || ||||| Sbjct 10206 TG-AATCTTTGTCTTAACGTTTTCAATGGTATCAGAGCCTTCGACTTCAAGGGTAATAGT 10264 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| |||||||| || || || ||||| Sbjct 10265 CTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10297 >seq1179 Length=2421 Score = 156 bits (172), Expect = 3e-33 Identities = 164/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| ||||| ||||||||||||||||||||||| || | | ||| | | ||| Sbjct 2414 AGTACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTACCATCT 2355 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || ||| | || | |||||| ||||| || |||||||| ||||| ||| Sbjct 2354 TCCAATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATCT 2295 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||| | ||| ||| | || | || || ||| ||| |||||||| || ||||| Sbjct 2294 TG-AATTTTAGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGT 2236 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| || || || ||||| || ||||| Sbjct 2235 TTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 2203 Score = 145 bits (160), Expect = 6e-30 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || |||||||| |||||||||||||||||||| || || | | || | | || Sbjct 2186 AGAACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCT 2127 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || ||| | || || | ||| ||||| || || ||||| ||||| ||| Sbjct 2126 TCCAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCT 2067 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||| || ||||| | || | || ||||| ||| |||||||| || || || Sbjct 2066 TG-AATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAACTTCAAGGGTGATGGT 2008 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| ||||||||||||||||| || || |||||| Sbjct 2007 TTTACCAGTTAAGGTTTTAACGAAAATTTGCATT 1974 >seq57 Length=71319 Score = 147 bits (162), Expect = 2e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || || ||||| ||||| ||||| || || | | || ||| ||| Sbjct 43431 AGAACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGACCATCC 43490 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| |||||| | || || | ||| ||||| || || ||||| ||||||||| Sbjct 43491 TCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCT 43550 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||| | ||| ||| |||| | ||||| || ||||||||||||||| || || Sbjct 43551 TG-AATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCCTTCTACTTCAAGAGTAATGGT 43609 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| | ||||||||||| || ||||| Sbjct 43610 TTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 43642 Score = 147 bits (162), Expect = 2e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || |||||||| |||||||||||||| ||||| ||||| | | || | | ||| Sbjct 43887 AGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTACCATCT 43946 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || || | || || | ||| ||||| || |||||||| ||||||||| Sbjct 43947 TCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCT 44006 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || || ||||| |||| | |||||| || ||| ||||||||||| || || Sbjct 44007 TG-AATCTTGGTCTTGACGTTTTCAATAGTGTCTGAGCCTTCGACTTCAAGAGTAATGGT 44065 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| ||||| || || || || ||||| Sbjct 44066 TTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 44098 Score = 147 bits (162), Expect = 2e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || |||||||| ||||||||||||||||| || || || | | || | | ||| Sbjct 44115 AGGACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGATAAAGTTCTACCATCT 44174 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| |||||| | || | |||||| ||||| || || ||||| || || ||| Sbjct 44175 TCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCT 44234 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || || |||||| |||| | || |||||| ||| |||||||| || || || Sbjct 44235 TG-AATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCAAGGGTAATGGT 44293 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| | ||||||||||| || ||||| Sbjct 44294 TTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 44326 Score = 138 bits (152), Expect = 9e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || || ||||||||||| |||||||| || | | || ||| || Sbjct 43659 AGGACTAAATGGAGGGTAGATTCTTTTTGGATGTTATAGTCAGATAAAGTACGACCGTCT 43718 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || || | || | |||||| ||||| || |||||||| ||||||||| Sbjct 43719 TCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTGTCT 43778 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | ||| || |||| | || |||||| ||| ||||||||||| || || Sbjct 43779 TG-AATCTTGGTTTTAACGTTTTCAATGGTATCAGAACCTTCAACTTCAAGAGTAATGGT 43837 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| ||||| || || ||||| Sbjct 43838 CTTACCAGTCAAGGTCTTAACGAAAATTTGCAT 43870 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || || ||||| ||||| |||||||| || | | || ||| || Sbjct 42975 AGAACTAAATGGAGGGTAGATTCCTTTTGGATGTTATAGTCAGATAAAGTACGACCGTCT 43034 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| |||||| | || || | ||| ||||| || |||||||| ||||||||| Sbjct 43035 TCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCT 43094 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || || ||||| |||| | || ||||| ||| |||||||| || || || Sbjct 43095 TG-AATCTTGGTCTTGACGTTTTCGATGGTATCAGAGCCTTCGACTTCAAGGGTAATGGT 43153 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| ||||| || || || || ||||| Sbjct 43154 TTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 43186 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || || ||||||||||| || || ||||| | | ||| || ||| Sbjct 43203 AGAACTAAATGGAGAGTAGATTCTTTTTGGATATTGTAATCAGACAAGGTACGTCCATCT 43262 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || || | || || | ||| ||||| || || ||||| || || ||| Sbjct 43263 TCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCCTTATCT 43322 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || || |||||| |||| | || |||||| ||| ||||| || || || || Sbjct 43323 TG-AATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCGAGGGTAATGGT 43381 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| ||||| || || ||||| Sbjct 43382 CTTACCAGTCAAGGTCTTAACGAAAATTTGCAT 43414 >seq778 Length=8042 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || || || || || ||||||||||| ||||| || || | | || | | ||| Sbjct 4707 AGAACTAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCT 4766 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || ||| | || || | ||| ||||| || || ||||| ||||||||| Sbjct 4767 TCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCT 4826 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||||| |||| | ||||||||| ||| ||||| ||||| || || Sbjct 4827 TGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCGAGAGTGATGGTC 4886 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTA 29790 || ||||||||||||||||| || || ||||| ||| Sbjct 4887 TTACCAGTTAAGGTTTTAACGAAGATTTGCATGTTA 4922 >seq298 Length=27992 Score = 118 bits (130), Expect = 8e-22 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || || ||||| || ||||||||||| ||||| ||||| | | || ||| || Sbjct 13190 AGGACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGATAAAGTACGACCGTCT 13249 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| |||||| | || | |||||| ||||| || || ||||| ||||||||| Sbjct 13250 TCTAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTCT 13309 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| |||||| |||| | || || ||| ||| ||||| || || |||||| Sbjct 13310 TGGATTTTAGCCTTGACATTTTCGATGGTATCGGAACCTTCAACTTCGAGGGTAATAGTT 13369 Query 29755 TTGCC 29759 || || Sbjct 13370 TTACC 13374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385213434713148