Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq329 136 5e-27 seq16 136 5e-27 seq529 96.9 4e-15 >seq329 Length=25976 Score = 136 bits (150), Expect = 5e-27 Identities = 326/482 (68%), Gaps = 16/482 (3%) Strand=Plus/Plus Query 91915 TATTCCTTTTATTGACACATCAATAAATGCTGTTTGGGATGATTGGCAAAATTATCCTAA 91974 ||| ||||||||||| | | ||||| | ||| |||||||||||||||||| | Sbjct 22646 TATGCCTTTTATTGATGTTACTGTGAATGCAGAATGGAGTGATTGGCAAAATTATCCAGA 22705 Query 91975 TGGTAGACCAAACCCTTTATATGCAAAACAAG-CAGAAATGTGGGGTGTAGATGGTTTAA 92033 ||||||||||| || | ||| | |||||| || || | | |||||||||| | Sbjct 22706 AGGTAGACCAAATCCAATTTATTCTCAACAAGTCATTGAT-TATAATCTAGATGGTTTGA 22764 Query 92034 TTTTTGGTTTTATTACTTTATCAGCTaaaaaaaaaGCATGTTGGGCTGCGCAAGATACTA 92093 || ||||||| || ||| |||| | ||| | || ||||||||| | ||| || | Sbjct 22765 TTCTTGGTTTCATCACTCTATCTACATCAAACACTGCTTGTTGGGCTTCTCAACCCACAA 22824 Query 92094 TGCCTTTAAATTGGTCTTTACCTTTGGCCAAAGAACTTGCTTTAGTTAAA-AAAGAAACA 92152 ||| | | ||||| | |||| ||||| ||| | | | ||||||| ||| || | Sbjct 22825 TGCATCTCGATTGGGCACTACCATTGGCTGAAG-ATATCCAAAAGTTAAATAAAAAAGTA 22883 Query 92153 ATCATTTCTTTTGGTGGAGCAAGTAATCCAGATATTTCATCTGAATTTTCAATAGATGAA 92212 ||| | || |||||||| ||| ||| || ||| | |||| || | ||||| Sbjct 22884 ATCGTATCATTTGGTGGTGCATCAAATAGTGACATTAGCACAAAATTCTCTGTTGATGAT 22943 Query 92213 CTTATTCAAACATATCTTGATATTATTGAAATGTACAACCCATCTGGGTTAGATTTTGAT 92272 | | || || ||| | | | ||| ||||||||| ||| ||| || ||||||||| Sbjct 22944 TTGGTACACACCTATAATCAAACTATCACAATGTACAATGCATATGGATTGGATTTTGAT 23003 Query 92273 CTTGAAAATGGGTTGTATAATGCAGATAAAATTTCTTCAGCAATTTCT----GTTGTA-- 92326 | || ||||| || || ||| ||| || || | | ||| || | || ||| Sbjct 23004 TTGGAGAATGGATTATACAATATAGACAATATATGTGAAGC-TTTGGTAAAAGTAGTAGC 23062 Query 92327 AAGTCAAAACATCCCGAATGTAATATTTCCTTAACACTACCAACAATGCCAACGGGTTTA 92386 ||| ||| |||| ||| || || || || ||||||||||||||||| ||||||| Sbjct 23063 AAG-CAATCCATC---AAT-TAGAATCTCATTCACACTACCAACAATGCCCGAGGGTTTA 23117 Query 92387 AC 92388 || Sbjct 23118 AC 23119 >seq16 Length=97561 Score = 136 bits (150), Expect = 5e-27 Identities = 327/488 (67%), Gaps = 10/488 (2%) Strand=Plus/Plus Query 91915 TATTCCTTTTATTGACACATCAATAAATGCTGTTTGGGATGATTGGCAAAATTATCCTAA 91974 ||| ||||||||||| ||| | ||||| | ||| |||||||||| ||||||| | Sbjct 8212 TATGCCTTTTATTGATGTATCTGTGAATGCCGAATGGAGTGATTGGCAACATTATCCAGA 8271 Query 91975 TGGTAGACCAAACCCTTTATATGCAAAACAAG-CAGAAATGTGGGGTGTAGATGGTTTAA 92033 |||||||||||| || | ||| | |||||| || || | | | ||||||||| Sbjct 8272 TGGTAGACCAAATCCAATTTATTCTCAACAAGTCATTGAT-TATAATCTTGATGGTTTAG 8330 Query 92034 TTTTTGGTTTTATTACTTTATCAGCTaaaaaaaaaGCATGTTGGGCTGCGCAAGATACTA 92093 | |||||||| |||||| |||| | ||| | || || |||||||| ||| | | Sbjct 8331 TCTTTGGTTTCATTACTCTATCTACATCAAACACTGCTTGCTGGGCTGCTCAACCCAAAA 8390 Query 92094 TGCCTTTAAATTGGTCTTTACCTTTGGCCAAAGAACTTGCTTTAGT-TAAAAAAGAAACA 92152 ||||| | |||||| || | || |||| | || | | | ||| || ||| || | Sbjct 8391 TGCCTCTCAATTGGGCTCTTCCATTGG-CTCAGGATATCCAAAAGTCCAATAAAAAAGTA 8449 Query 92153 ATCATTTCTTTTGGTGGAGCAAGTAATCCAGATATTTCATCTGAATTTTCAATAGATGAA 92212 ||| | || |||||||| ||| ||| ||||||| || |||| | | ||| || Sbjct 8450 ATCGTATCATTTGGTGGTGCATCAAATAGAGATATTAGCACTCAATTCACTGTTGATCAA 8509 Query 92213 CTTATTCAAACATATCTTGATATTATTGAAATGTACAACCCATCTGGGTTAGATTTTGAT 92272 | | | || ||| | | | || |||||||||| | | ||| || ||||||||| Sbjct 8510 TTGGTAGATACCTATAATCAAACCATCACAATGTACAACGCCTATGGCTTGGATTTTGAT 8569 Query 92273 CTTGAAAATGGGTTGTATAATGCAGATAAAATTTCTTCAGCAATTTCTGT---TGTAAAG 92329 | |||||||| || || ||| || || |||| | ||| || || ||| | Sbjct 8570 TTGGAAAATGGATTATACAATATTGACAATATTTGTGGAGC---TTTGGTCAAAGTAGTG 8626 Query 92330 TCAAAACATCCCGAATGTAATATTTCCTTAACACTACCAACAATGCCAACGGGTTTAACA 92389 ||| |||| | ||| || || || || || ||||||||||| ||||||||| Sbjct 8627 GCAAGCAATCCATCAATTAAAATCTCATTCACCCTTCCAACAATGCCCGAGGGTTTAACT 8686 Query 92390 AATGTTGG 92397 | || ||| Sbjct 8687 AGTGCTGG 8694 >seq529 Length=15923 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 ||| ||||| |||| || ||||| || | ||| | |||| | |||| || || ||||| Sbjct 12416 CGTGTACCTCAAATTGGTGATAAGTTCTCTTCTCGTCATGGTC-AAAAGGGTACCTGTGG 12358 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 |||| |||| ||||||||| | || || || | | |||| | |||||||||||||| Sbjct 12357 TATGGCTTATCGTCAAGAAGATTTACCTTTCACTGTTGAAGGTGTCGTACCAGATATTAT 12298 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 | | ||||| || ||||||||| | ||||| ||| |||| | |||| Sbjct 12297 TGTAAATCCTCATGCTATTCCATCTCGTATGACTATTGGTCAATTGATTG 12248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635167850023840