Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq16 107 3e-18 seq329 91.5 2e-13 >seq16 Length=97561 Score = 107 bits (118), Expect = 3e-18 Identities = 464/726 (64%), Gaps = 31/726 (4%) Strand=Plus/Plus Query 92983 CCTTTTATTGATACATCAATAAATGCAATTTGGGATGATTGGCAGCATTATCCCAACGGC 93042 |||||||||||| ||| | ||||| ||| ||||||||| |||||||| | || Sbjct 8216 CCTTTTATTGATGTATCTGTGAATGCCGAATGGAGTGATTGGCAACATTATCCAGATGGT 8275 Query 93043 AGACCAAATTATTTGTATTCCAAACAAGCTGTTGAATGGAATGTTGACGGTTTAGTATTT 93102 ||||||||| | ||||| |||||| |||| | ||| |||| |||||||| ||| Sbjct 8276 AGACCAAATCCAATTTATTCTCAACAAGTCATTGATTATAATCTTGATGGTTTAGTCTTT 8335 Query 93103 GGTTTTATTACATTATCTGCTAAAGGTAAGGCTTGTTGGGCTGCTCAAGATACTATGCCA 93162 ||||| ||||| ||||| | | | ||||| |||||||||||| | ||||| Sbjct 8336 GGTTTCATTACTCTATCTACATCAAACACTGCTTGCTGGGCTGCTCAACCCAAAATGCCT 8395 Query 93163 TTAGACTGGTCTTTACCTTTAGCCAAAGAACTTGCTTTATCTGGTAAAGAAACAATTATT 93222 | | ||| || | || || || | || | || |||| || ||| | Sbjct 8396 CTCAATTGGGCTCTTCCATTGGCTCAGGATATCCAAAAGTCCAATAAAAAAGTAATCGTA 8455 Query 93223 TCATTCGGTGGAGCAAGTAACCCAGATATTTCATCTAAATTTTCAATTGATGAATTGGTT 93282 ||||| ||||| ||| || ||||||| || |||| | ||||| ||||||| Sbjct 8456 TCATTTGGTGGTGCATCAAATAGAGATATTAGCACTCAATTCACTGTTGATCAATTGGTA 8515 Query 93283 CAAACTTACTTTGATGTAATAGAATTATATAATCCATCTGGATTAGATTTTGATTTAGAA 93342 | || || | | || | | || || | | ||| || ||||||||||| ||| Sbjct 8516 GATACCTATAATCAAACCATCACAATGTACAACGCCTATGGCTTGGATTTTGATTTGGAA 8575 Query 93343 AATGGTTTGTATGACGCAGAAAAAATAAGTTCAGCTGTTGGCATTGTCAAATCTA--AAT 93400 ||||| || || | || || || || |||| | | || || | | ||| Sbjct 8576 AATGGATTATACAATATTGACAATATTTGTGGAGCTTTGGTCAAAGTAGTGGCAAGCAAT 8635 Query 93401 ACCCTAATTGTAATATTTCTCTGACACTACCAACAATGCCAACTGGTTTAACGGCTGTTG 93460 | ||| ||| || || | || || ||||||||||| |||||||| || || Sbjct 8636 CCATCAAT--TAAAATCTCATTCACCCTTCCAACAATGCCCGAGGGTTTAACTAGTGCTG 8693 Query 93461 GATTAAAACTTGTCTCAATTTTTCaaa-aaaaTAATTTTGATTTTGTGGTCAATGGTATG 93519 | | |||||| ||| |||| | | |||| ||| | || ||||||||| Sbjct 8694 GTCTTGGACTTGT-ACAAAAGGCCAAAGATAGTAATCTTGTAATCACTGTTAATGGTATG 8752 Query 93520 GCTATGGATTATTATTCTCCGGAAGCAGCTTTGGATATGGGT---AAAGCT------GCC 93570 || ||||| ||||| || | || | || | ||||||||| |||||| ||| Sbjct 8753 GCCATGGACTATTA---TCAAGGAGAAACTGTTGATATGGGTGCCAAAGCTATCCAAGCC 8809 Query 93571 GTTGAAGCAGCAAAAAGT--ATTGCATCTCAACTGGCTA---AAGTGTACCCATCTGAAC 93625 ||||| | |||||| ||| || ||| || ||||| ||||||| Sbjct 8810 GTTGACTCTATTAAAAGTCAATTACA----AACCCTTTATCCAAGTG----AATCTGAAG 8861 Query 93626 CATCTATATATTCTAAGGTAGGAATAACACCTATGATTGGTCTAAATGATGATTTATCAA 93685 | | ||| || || || || || ||||||||||| |||||||||||||| | Sbjct 8862 CTGTTTGTTATAGTAGAACAGCCATTACTCCAATGATTGGTCTCAATGATGATTTATCCA 8921 Query 93686 TGTTTA 93691 |||||| Sbjct 8922 TGTTTA 8927 >seq329 Length=25976 Score = 91.5 bits (100), Expect = 2e-13 Identities = 383/599 (64%), Gaps = 28/599 (5%) Strand=Plus/Plus Query 92983 CCTTTTATTGATACATCAATAAATGCAATTTGGGATGATTGGCAGCATTATCCCAACGGC 93042 |||||||||||| | | |||||| ||| ||||||||| ||||||| | || Sbjct 22650 CCTTTTATTGATGTTACTGTGAATGCAGAATGGAGTGATTGGCAAAATTATCCAGAAGGT 22709 Query 93043 AGACCAAATTATTTGTATTCCAAACAAGCTGTTGAATGGAATGTTGACGGTTTAGTATTT 93102 ||||||||| | ||||| |||||| |||| | ||| | || ||||| | || Sbjct 22710 AGACCAAATCCAATTTATTCTCAACAAGTCATTGATTATAATCTAGATGGTTTGATTCTT 22769 Query 93103 GGTTTTATTACATTATCTGCTAAAGGTAAGGCTTGTTGGGCTGCTCAAGATACTATGCCA 93162 ||||| || || ||||| | | | |||||||||||| ||||| || |||| Sbjct 22770 GGTTTCATCACTCTATCTACATCAAACACTGCTTGTTGGGCTTCTCAACCCACAATGCAT 22829 Query 93163 TTAGACTGGTCTTTACCTTTAGCCAAAGAACTTGCTTTATCT----GGTAAAGAAACAAT 93218 | || ||| | |||| || || |||| |||| | |||| ||| || Sbjct 22830 CTCGATTGGGCACTACCATTGGCTGAAGA--------TATCCAAAAGTTAAATAAAAAAG 22881 Query 93219 TATT----TCATTCGGTGGAGCAAGTAACCCAGATATTTCATCTAAATTTTCAATTGATG 93274 || | ||||| ||||| ||| || || ||| | ||||| || |||||| Sbjct 22882 TAATCGTATCATTTGGTGGTGCATCAAATAGTGACATTAGCACAAAATTCTCTGTTGATG 22941 Query 93275 AATTGGTTCAAACTTACTTTGATGTAATAGAATTATATAATCCATCTGGATTAGATTTTG 93334 | ||||| || || || | | || | | || ||| ||| |||||| ||||||| Sbjct 22942 ATTTGGTACACACCTATAATCAAACTATCACAATGTACAATGCATATGGATTGGATTTTG 23001 Query 93335 ATTTAGAAAATGGTTTGTATGACGCAGAAAAAATAAGTTCAGCTGTTGGCATTGTCAAAT 93394 |||| || ||||| || || | ||| || ||| || |||| | | | || | Sbjct 23002 ATTTGGAGAATGGATTATACAATATAGACAATATATGTGAAGCTTTGGTAAAAGTAGTAG 23061 Query 93395 CTA--AATACCCTAATTGTAATATTTCTCTGACACTACCAACAATGCCAACTGGTTTAAC 93452 | | ||| | ||| || || || | ||||||||||||||||| |||||||| Sbjct 23062 CAAGCAATCCATCAAT--TAGAATCTCATTCACACTACCAACAATGCCCGAGGGTTTAAC 23119 Query 93453 GGCTGTTGGATTAAAACTTGTCTCAATTTTTCaaa-aaaaTAATTTTGATTTTGTGGTCA 93511 ||||| | | |||||| || |||| | | | || ||| | || | Sbjct 23120 TCCTGTTAGCCTTGGACTTGT-ACAGAAGGCCAAAGATAGTGATCTTGTAGTCACTGTTA 23178 Query 93512 ATGGTATGGCTATGGATTATTATTCTCCGGAAGCAGCTTTGGATATGGGT---AAAGCT 93567 |||||||||| ||||| ||||| || | || | || | ||||||||| |||||| Sbjct 23179 ATGGTATGGCCATGGACTATTA---TCAAGGAGAAACTGTTGATATGGGTGCCAAAGCT 23234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655269941452000