Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq16 136 5e-27 seq329 132 6e-26 seq529 89.7 6e-13 >seq16 Length=97561 Score = 136 bits (150), Expect = 5e-27 Identities = 327/488 (67%), Gaps = 10/488 (2%) Strand=Plus/Plus Query 89403 TATTCCTTTTATTGACACATCAATAAATGCTGTTTGGGATGATTGGCAAAATTATCCCAA 89462 ||| ||||||||||| ||| | ||||| | ||| |||||||||| ||||||| | Sbjct 8212 TATGCCTTTTATTGATGTATCTGTGAATGCCGAATGGAGTGATTGGCAACATTATCCAGA 8271 Query 89463 TGGTAGACCAAATCCTTTATATGCAAAACAAG-CAGAAATATGGGGTGTAGATGGTTTAA 89521 ||||||||||||||| | ||| | |||||| || || | | | ||||||||| Sbjct 8272 TGGTAGACCAAATCCAATTTATTCTCAACAAGTCATTGAT-TATAATCTTGATGGTTTAG 8330 Query 89522 TTTTTGGTTTTATTACTTTATCAGCTaaaaaaaaaGCATGTTGGGCTGCACAAGATACTA 89581 | |||||||| |||||| |||| | ||| | || || |||||||| ||| | | Sbjct 8331 TCTTTGGTTTCATTACTCTATCTACATCAAACACTGCTTGCTGGGCTGCTCAACCCAAAA 8390 Query 89582 TGCCTTTAAATTGGTCTTTACCTTTGGCCAAAGAACTTGCTTTAGT-TAAAAAAGAAACA 89640 ||||| | |||||| || | || |||| | || | | | ||| || ||| || | Sbjct 8391 TGCCTCTCAATTGGGCTCTTCCATTGG-CTCAGGATATCCAAAAGTCCAATAAAAAAGTA 8449 Query 89641 ATTGTTTCTTTTGGTGGAGCAAGTAATCCAGATATTTCATCTGAATTTTCAATAGAAGAA 89700 || || || |||||||| ||| ||| ||||||| || |||| | | || || Sbjct 8450 ATCGTATCATTTGGTGGTGCATCAAATAGAGATATTAGCACTCAATTCACTGTTGATCAA 8509 Query 89701 CTTATTCAAACATATCTTGATATTATTGAAATGTACAACCCATCTGGGTTGGATTTTGAC 89760 | | | || ||| | | | || |||||||||| | | ||| ||||||||||| Sbjct 8510 TTGGTAGATACCTATAATCAAACCATCACAATGTACAACGCCTATGGCTTGGATTTTGAT 8569 Query 89761 CTTGAAAATGGATTGTATAATGCAGATAAAATTTCTTCAGCAATTTCTGT---TGTAAAG 89817 | ||||||||||| || ||| || || |||| | ||| || || ||| | Sbjct 8570 TTGGAAAATGGATTATACAATATTGACAATATTTGTGGAGC---TTTGGTCAAAGTAGTG 8626 Query 89818 TCAAAATATCCCGAATGTAATATTTCCTTAACACTACCAACAATGCCAACTGGTTTAACA 89877 ||| |||| | ||| || || || || || ||||||||||| |||||||| Sbjct 8627 GCAAGCAATCCATCAATTAAAATCTCATTCACCCTTCCAACAATGCCCGAGGGTTTAACT 8686 Query 89878 AATGTTGG 89885 | || ||| Sbjct 8687 AGTGCTGG 8694 >seq329 Length=25976 Score = 132 bits (146), Expect = 6e-26 Identities = 322/480 (67%), Gaps = 12/480 (3%) Strand=Plus/Plus Query 89403 TATTCCTTTTATTGACACATCAATAAATGCTGTTTGGGATGATTGGCAAAATTATCCCAA 89462 ||| ||||||||||| | | ||||| | ||| |||||||||||||||||| | Sbjct 22646 TATGCCTTTTATTGATGTTACTGTGAATGCAGAATGGAGTGATTGGCAAAATTATCCAGA 22705 Query 89463 TGGTAGACCAAATCCTTTATATGCAAAACAAG-CAGAAATATGGGGTGTAGATGGTTTAA 89521 |||||||||||||| | ||| | |||||| || || | | |||||||||| | Sbjct 22706 AGGTAGACCAAATCCAATTTATTCTCAACAAGTCATTGAT-TATAATCTAGATGGTTTGA 22764 Query 89522 TTTTTGGTTTTATTACTTTATCAGCTaaaaaaaaaGCATGTTGGGCTGCACAAGATACTA 89581 || ||||||| || ||| |||| | ||| | || ||||||||| | ||| || | Sbjct 22765 TTCTTGGTTTCATCACTCTATCTACATCAAACACTGCTTGTTGGGCTTCTCAACCCACAA 22824 Query 89582 TGCCTTTAAATTGGTCTTTACCTTTGGCCAAAGAACTTGCTTTAGTTAAA-AAAGAAACA 89640 ||| | | ||||| | |||| ||||| ||| | | | ||||||| ||| || | Sbjct 22825 TGCATCTCGATTGGGCACTACCATTGGCTGAAG-ATATCCAAAAGTTAAATAAAAAAGTA 22883 Query 89641 ATTGTTTCTTTTGGTGGAGCAAGTAATCCAGATATTTCATCTGAATTTTCAATAGAAGAA 89700 || || || |||||||| ||| ||| || ||| | |||| || | || || Sbjct 22884 ATCGTATCATTTGGTGGTGCATCAAATAGTGACATTAGCACAAAATTCTCTGTTGATGAT 22943 Query 89701 CTTATTCAAACATATCTTGATATTATTGAAATGTACAACCCATCTGGGTTGGATTTTGAC 89760 | | || || ||| | | | ||| ||||||||| ||| ||| ||||||||||| Sbjct 22944 TTGGTACACACCTATAATCAAACTATCACAATGTACAATGCATATGGATTGGATTTTGAT 23003 Query 89761 CTTGAAAATGGATTGTATAATGCAGATAAAATTTCTTCAGCAATTTCTGTTGTAA--AGT 89818 | || |||||||| || ||| ||| || || | | ||| | || | || ||| Sbjct 23004 TTGGAGAATGGATTATACAATATAGACAATATATGTGAAGC----TTTGGTAAAAGTAGT 23059 Query 89819 --CAAAATATCCCGAATGTAATATTTCCTTAACACTACCAACAATGCCAACTGGTTTAAC 89876 ||| |||| | || || || || ||||||||||||||||| |||||||| Sbjct 23060 AGCAAGCAATCCATCAATTAGAATCTCATTCACACTACCAACAATGCCCGAGGGTTTAAC 23119 >seq529 Length=15923 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 192993 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGG 193051 ||| ||||| |||| || ||||| || | ||| | |||| | |||| || || ||||| Sbjct 12416 CGTGTACCTCAAATTGGTGATAAGTTCTCTTCTCGTCATGGTC-AAAAGGGTACCTGTGG 12358 Query 193052 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 193111 |||| |||| ||||||||| | || || || | |||| | |||||||||||||| Sbjct 12357 TATGGCTTATCGTCAAGAAGATTTACCTTTCACTGTTGAAGGTGTCGTACCAGATATTAT 12298 Query 193112 TATTAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTGCTACTGT-TA 193170 | | ||||| || |||||| || | ||||| ||| |||| | |||| | ||| || Sbjct 12297 TGTAAATCCTCATGCTATTCCATCTCGTATGACTATTGGTCAATTGATTG--AATGTCTA 12240 Query 193171 -TGGGTAAA 193178 |||||||| Sbjct 12239 TTGGGTAAA 12231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628521552046080