Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq79 140 3e-28 seq57 127 2e-24 seq1179 122 9e-23 seq778 104 2e-17 seq298 102 8e-17 >seq79 Length=61457 Score = 140 bits (154), Expect = 3e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 |||||||| | |||||||||||||| ||||||||||| | || | ||||| Sbjct 10317 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGATAAAGTACGACCATCTTCC 10376 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | ||| ||||||||| |||| | |||||| |||||||| || || ||||||||||| | Sbjct 10377 AATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTC-TTG 10435 Query 137323 ATTTTTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 | |||| |||||| | | ||| | ||||||| ||| ||||||| ||| | || || Sbjct 10436 AATTTTAGTTTTAACATTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATGGTTTT 10495 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || ||||| ||||| ||||| ||||||||| Sbjct 10496 ACCAGTCAAGGTTTTGACGAAAATTTGCATA 10526 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 |||||||||| |||||||||||||| |||||||| || | || || ||||| Sbjct 10773 ACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCT 10832 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | ||||||||| ||| | || | |||||| |||||||| || || ||||||||||| | Sbjct 10833 AATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTC-TTG 10891 Query 137323 ATTTTTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 | || || ||| | | ||| | ||||||| ||| ||||||| ||| | ||||| Sbjct 10892 GATCTTGGTCTTAACGTTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATAGTCTT 10951 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || ||||| ||||| ||||| ||||||||| Sbjct 10952 ACCAGTCAAGGTTTTGACGAAAATTTGCATA 10982 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | | || ||||||| || ||||||||||| |||||||| || Sbjct 10983 CCACCTCTTAATCTAAGGACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAT 11042 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | ||||||||| ||| |||| | |||||| |||||||| || Sbjct 11043 AAGGTTCTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGG 11102 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| |||||| |||| | ||| | || || | | ||| ||| Sbjct 11103 ATACCTTCTTTGTCTTGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACT 11162 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | || ||||| || || ||||| || || |||||||| Sbjct 11163 TCAAGGGTGATGGTTTTGCCAGTTAAAGTTTTAACAAAAATTTGCAT 11209 Score = 111 bits (122), Expect = 2e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||||||||| | |||||||||||||| |||||||| || | || | |||||| Sbjct 10544 AACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTACGACCGTCTTC 10603 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 | ||||||||| || | || || | ||| |||||||| || || ||||||||||| Sbjct 10604 TAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTG 10663 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 |||||| |||| | ||| | || || | | ||| ||||||| || | || || Sbjct 10664 AATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCAACTTCAAGGGTGATGGTTTT 10723 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || || ||||| ||||| ||||||||| Sbjct 10724 ACCAGTTAAAGTTTTGACGAAAATTTGCATA 10754 >seq57 Length=71319 Score = 127 bits (140), Expect = 2e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||||||||| | |||||||| ||||| |||||||| || | || | || || Sbjct 43433 AACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGACCATCCTC 43492 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 | ||||||||||||| |||| | |||||| |||||||| || || ||||||||||| | Sbjct 43493 CAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTC-TT 43551 Query 137322 AATTTTTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCT 137380 | |||| |||||| | | ||| | ||||||| | ||||||||||| ||| | || | Sbjct 43552 GAATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCCTTCTACTTCAAGAGTAATGGTTT 43611 Query 137381 TGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 | || || | ||||| || || ||||||||| Sbjct 43612 TACCAGTGAGAGTTTTAACAAAAATTTGCATA 43643 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||||||||||| || ||||||||||| ||||||||||| | || || ||||| Sbjct 43889 AACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTACCATCTTC 43948 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 | ||||||||| || | || | |||||| |||||||| || || ||||||||||| Sbjct 43949 TAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTG 44008 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 ||| || || | | ||| | ||||||| | ||| ||||||| ||| | || || Sbjct 44009 AATCTTGGTCTTGACGTTTTCAATAGTGTCTGAGCCTTCGACTTCAAGAGTAATGGTTTT 44068 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || ||||| || || ||||| ||||||||| Sbjct 44069 ACCAGTCAAGGTCTTGACGAAAATTTGCATA 44099 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 |||||||| | |||||||||||||| ||||| || || | || | |||||| Sbjct 43662 ACTAAATGGAGGGTAGATTCTTTTTGGATGTTATAGTCAGATAAAGTACGACCGTCTTCT 43721 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | ||||||||| || | || || | ||| |||||||| || || ||||||||||| | Sbjct 43722 AATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTGTC-TTG 43780 Query 137323 ATTTTTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 | | || |||||| | | ||| | || || | ||| ||||||| ||| | ||||| Sbjct 43781 AATCTTGGTTTTAACGTTTTCAATGGTATCAGAACCTTCAACTTCAAGAGTAATGGTCTT 43840 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || ||||| || || ||||| ||||||||| Sbjct 43841 ACCAGTCAAGGTCTTAACGAAAATTTGCATA 43871 Score = 105 bits (116), Expect = 7e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||||||||| | |||||||| ||||| ||||| || || | || | |||||| Sbjct 42977 AACTAAATGGAGGGTAGATTCCTTTTGGATGTTATAGTCAGATAAAGTACGACCGTCTTC 43036 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 | ||||||||||||| | || | |||||| |||||||| || || ||||||||||| Sbjct 43037 TAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTG 43096 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 ||| || || | | ||| | || || | | ||| ||||||| || | || || Sbjct 43097 AATCTTGGTCTTGACGTTTTCGATGGTATCAGAGCCTTCGACTTCAAGGGTAATGGTTTT 43156 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || ||||| || || ||||| ||||||||| Sbjct 43157 ACCAGTCAAGGTCTTGACGAAAATTTGCATA 43187 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTT 137260 ||||||||| | |||||||||||||| || |||||||| || || | || | |||| Sbjct 43205 AACTAAATGGAGAGTAGATTCTTTTTGGATATTGTAATCAGACAAGGTACGTCCA-TCTT 43263 Query 137261 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 137320 | | ||||||||| || | || | |||||| |||||||| || || ||||| || || Sbjct 43264 CTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCCTTATCTT 43323 Query 137321 TAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCT 137380 ||| || || | | ||| | || || | ||| ||||| | || | |||| Sbjct 43324 GAATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCGAGGGTAATGGTCT 43383 Query 137381 TGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 | || ||||| || || ||||| ||||||||| Sbjct 43384 TACCAGTCAAGGTCTTAACGAAAATTTGCATA 43415 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 |||||||||| || ||||||||||| || ||||| || | || || ||||| Sbjct 44118 ACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGATAAAGTTCTACCATCTTCT 44177 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | ||||||||||||| | || || | ||| |||||||| || || ||||| || || | Sbjct 44178 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCTTGA 44237 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || || | | ||| | || || | ||| ||||||| || | || || Sbjct 44238 ATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCAAGGGTAATGGTTTTA 44297 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || | ||||| || || ||||||||| Sbjct 44298 CCAGTGAGAGTTTTAACAAAAATTTGCATA 44327 >seq1179 Length=2421 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | | ||||||||||| || ||||||||||| |||||||| || | Sbjct 2201 CCACCTCTTAATCTGAGAACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 2142 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || |||||| | ||||||||| ||| |||| | |||||| |||||||| || Sbjct 2141 AAAGTTCTACCGTCTTCCAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGG 2082 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || |||||| || | | || | || || | | ||| ||| Sbjct 2081 ATACCTTCTTTATCTTGAATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAACT 2022 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | || || || || || ||||| ||||| |||||||| Sbjct 2021 TCAAGGGTGATGGTTTTACCAGTTAAGGTTTTAACGAAAATTTGCAT 1975 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || || |||| || ||||||||||| ||||| || || | || || ||||| Sbjct 2411 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTACCATCTTCC 2352 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | ||||||||| ||| | || || | ||| |||||||| || || |||||||| || | Sbjct 2351 AATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATC-TTG 2293 Query 137323 ATTTTTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 | |||| |||||| | | || | || || | ||| ||||||| || | || || Sbjct 2292 AATTTTAGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGTTTT 2233 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || ||||| || || || || ||||||||| Sbjct 2232 ACCAGTCAAAGTCTTGACAAAAATTTGCATA 2202 >seq778 Length=8042 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 |||||| || | || ||||||||||| |||||||| || | || || ||||| Sbjct 4709 AACTAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTC 4768 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 | ||||||||| ||| |||| | |||||| |||||||| || || ||||||||||| Sbjct 4769 TAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTG 4828 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || || | | ||| | ||||| | ||| ||||| | ||| | ||||| Sbjct 4829 GATCTTGGCCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCGAGAGTGATGGTCTT 4888 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || || ||||| ||||| |||||||| Sbjct 4889 ACCAGTTAAGGTTTTAACGAAGATTTGCAT 4918 >seq298 Length=27992 Score = 102 bits (112), Expect = 8e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 ||||| |||| |||||||||||||| |||||||||||| | || | |||||| Sbjct 13193 ACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGATAAAGTACGACCGTCTTCT 13252 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 | ||||||||||||| |||| || | ||| |||||||| || || ||||||||||| Sbjct 13253 AATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTC 13308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488536500849600