Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq79 89.7 9e-13 seq57 89.7 9e-13 >seq79 Length=61457 Score = 89.7 bits (98), Expect = 9e-13 Identities = 102/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || || ||||| ||||||| ||| | || ||||||||| Sbjct 10098 AGAGTGGATTCCTTTTGAATGTTATAGTCAGATAAAGTACGACCGTCTTCTAATTGTTTA 10157 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | || || |||||||||||| | || | || ||||||||||||||||||||| Sbjct 10158 CCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCTTGAATCTTTGTC 10217 Query 81753 TTTATATTTTCAATCGTAT 81771 || | |||||||| |||| Sbjct 10218 TTAACGTTTTCAATGGTAT 10236 >seq57 Length=71319 Score = 89.7 bits (98), Expect = 9e-13 Identities = 102/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || ||||| || ||||||| |||||||| |||||||| Sbjct 44127 AGAGTGGATTCTTTTTGAATATTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTA 44186 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || |||||||||||| | || | || ||||||||||||||||||| | Sbjct 44187 CCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCTTGAATCTTGGTC 44246 Query 81753 TTTATATTTTCAATCGTAT 81771 || | |||||| || |||| Sbjct 44247 TTGACATTTTCGATGGTAT 44265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903397332638080