Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq79 122 6e-23 seq57 116 2e-21 seq1179 109 4e-19 >seq79 Length=61457 Score = 122 bits (134), Expect = 6e-23 Identities = 169/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | | || ||||| ||||| |||||||| ||||||||||| || Sbjct 10298 ACCACCTCTGAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGA 10357 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || |||||||| || || ||||| || ||||| || ||||| | || Sbjct 10358 TAAAGTACGACCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGG 10417 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 | |||||||||||| |||||| |||| ||||| || | |||||| ||| || Sbjct 10418 AATACCTTCTTTGTCTTGAATTTT-AGTTTTAACATTTTCAATGGTGTC---TGAACCTT 10473 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| || || |||||||| || || ||||| || || || |||||| Sbjct 10474 CGACTTCAAGAGTAATGGTTTTACCAGTCAAGGTTTTGACGAAAATTTGCATA 10526 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | | |||||||| |||||| |||||||| |||||||| || || Sbjct 10982 ACCACCTCTTAATCTAAGGACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGA 11041 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | || || |||||||| |||||||| || ||||| || ||||| | || Sbjct 11042 TAAGGTTCTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGG 11101 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| || | |||| || | || || ||| | Sbjct 11102 GATACCTTCTTTGTCTTGAATTTT-AGTCTTTACATTTTCAATAGTATCAGAGCCTTCGA 11160 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 11161 CTTCAAGGGTGATGGTTTTGCCAGTTAAAGTTTTAACAAAAATTTGCAT 11209 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | | || ||||| ||||| |||||||| |||||||| || || Sbjct 10526 ACCACCTCTGAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGA 10585 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| || |||||||| ||||| ||||| | | || ||||| | || Sbjct 10586 TAAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGG 10645 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| || | |||| || | || || ||| | Sbjct 10646 GATACCTTCTTTGTCTTGAATTTT-AGTCTTTACATTTTCAATAGTATCAGAGCCTTCAA 10704 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| |||||||| ||||| ||||| || || || |||||| Sbjct 10705 CTTCAAGGGTGATGGTTTTACCAGTTAAAGTTTTGACGAAAATTTGCATA 10754 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | | || ||||| ||||| |||||||| |||||||| || || Sbjct 10754 ACCACCTCTAAGTCTGAGGACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGA 10813 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | || || |||||||| ||||||||||| ||||| || ||||| | || Sbjct 10814 TAAAGTTCTACCATCTTCTAATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGG 10873 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 | |||||||||||| || || || | ||| | || | |||||| ||| || Sbjct 10874 GATACCTTCTTTGTCTTGGATCTT-GGTCTTAACGTTTTCAATGGTGTC---TGAACCTT 10929 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| || || || ||||| || || ||||| || || || |||||| Sbjct 10930 CGACTTCAAGAGTAATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCATA 10982 >seq57 Length=71319 Score = 116 bits (128), Expect = 2e-21 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | | || ||||| ||||| || ||||| |||||||| || || Sbjct 43415 ACCACCTCTGAGTCTAAGAACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 43474 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| || ||||| || ||||| || ||||| | || Sbjct 43475 TAAAGTACGACCATCCTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGG 43534 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 | |||||||||||| |||||| |||| ||||| || | |||||| ||| || Sbjct 43535 GATACCTTCTTTGTCTTGAATTTT-AGTTTTAACATTTTCAATGGTGTC---TGAGCCTT 43590 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| || || |||||||| || | ||||| ||||| || |||||| Sbjct 43591 CTACTTCAAGAGTAATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCATA 43643 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | | || ||||| |||||| |||||||| ||||||||||| || Sbjct 43871 ACCACCTCTAAGTCTAAGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGA 43930 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | || || |||||||| ||||| ||||| ||||| || ||||| | || Sbjct 43931 TAAAGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGG 43990 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 | |||||||||||| ||| || || | || | || | ||||| ||| || Sbjct 43991 AATACCTTCTTTGTCTTGAATCTT-GGTCTTGACGTTTTCAATAGTGTC---TGAGCCTT 44046 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| || || |||||||| || || || || || || || |||||| Sbjct 44047 CGACTTCAAGAGTAATGGTTTTACCAGTCAAGGTCTTGACGAAAATTTGCATA 44099 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || ||||||||| | | | || ||||| || || || ||||| ||||| || || Sbjct 42956 GTTACCACCTCTGAGTCTGAGAACTAAATGGAGGGTAGATTCCTTTTGGATGTTATAGTC 43015 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 || | || || |||| || |||||||| || |||||||| ||||| || ||||| | Sbjct 43016 AGATAAAGTACGACCGTCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCGGG 43075 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATT 33697 || | |||||||||||| ||| || || | || | || | ||| || || Sbjct 43076 TGGAATACCTTCTTTGTCTTGAATCTT-GGTCTTGACGTTTTCGATGGTATCAGAGCCTT 43134 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| || || |||||||| || || || || || || || |||||| Sbjct 43135 CGACTTCAAGGGTAATGGTTTTACCAGTCAAGGTCTTGACGAAAATTTGCATA 43187 >seq1179 Length=2421 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | | || ||||| |||||| |||||||| |||||||| || || Sbjct 2202 ACCACCTCTTAATCTGAGAACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGA 2143 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | |||| ||||||||||| || ||||| || ||||| || ||||| | || Sbjct 2142 CAAAGTTCTACCGTCTTCCAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGG 2083 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || |||||| || | || | || | || || ||| | Sbjct 2082 GATACCTTCTTTATCTTGAATTTT-AGTCTTGACGTTATCAATTGTATCAGAGCCTTCAA 2024 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| |||||||| ||||| ||||| || || || ||||| Sbjct 2023 CTTCAAGGGTGATGGTTTTACCAGTTAAGGTTTTAACGAAAATTTGCAT 1975 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| |||||||| ||||| || || || | || | | || ||| Sbjct 2411 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTACCATCTTCC 2352 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 |||||||| || |||||||| | | || ||||| | || | ||||||||| || | Sbjct 2351 AATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATCTTGA 2292 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| |||| ||||| || | || ||| ||| || |||| ||||| ||||| Sbjct 2291 ATTTT-AGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGTTTT 2233 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || || || || ||||| || |||||| Sbjct 2232 ACCAGTCAAAGTCTTGACAAAAATTTGCATA 2202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328699080533760