Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq57 114 3e-20 seq79 111 4e-19 seq298 107 5e-18 seq1179 104 6e-17 >seq57 Length=71319 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| || ||| | ||||| ||| | || ||||| | ||| || ||| Sbjct 44074 ACTGGTAAAACCATTACTCTTGAAGTCGAAGGCTCAGACACTATTGAAAACGTCAAGACC 44015 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| |||||||| ||| || || ||| | | || |||||||| || Sbjct 44014 AAGATTCAAGACAAAGAAGGTATTCCACCCGATCAACAACGTTTAATTTTCGCCGGTAAA 43955 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || |||||||| || ||||| | ||||||||| |||| ||||| || |||||||| Sbjct 43954 CAATTAGAAGATGGTAGAACTTTATCTGATTACAACATCCAAAAAGAATCCACTCTTCAT 43895 Query 206374 CTTGTTTTGAGACTTCGA 206391 | ||| | |||||| || Sbjct 43894 TTAGTTCTTAGACTTAGA 43877 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| || || | ||||| ||| ||||||| || ||||| Sbjct 44311 AAAACTCTCACTGGTAAAACCATTACCCTTGAAGTCGAAGGTTCTGATACCATCGAAAAT 44252 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || ||||| || || || ||||||||||| || Sbjct 44251 GTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAACAAAGACTTATTTTT 44192 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || || |||||||| || ||||| | || ||||| | || ||||| || Sbjct 44191 GCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAATATTCAAAAAGAATCC 44132 Query 206365 ACTCTTCA 206372 |||||||| Sbjct 44131 ACTCTTCA 44124 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || || | ||||| ||| ||||||| || ||||| || ||| Sbjct 43390 ACTGGTAAGACCATTACCCTCGAAGTCGAAGGTTCTGATACCATCGAAAATGTCAAGACC 43331 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| || || || ||| | | || |||||||| || Sbjct 43330 AAGATTCAAGATAAGGAAGGTATCCCACCCGATCAACAACGTTTAATTTTCGCCGGTAAA 43271 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || ||||||||| | || ||| | |||||||| |||| ||||| |||||||| || Sbjct 43270 CAATTAGAAGATGGACGTACCTTGTCTGATTACAATATCCAAAAAGAATCTACTCTCCAT 43211 Query 206374 CTTGTTTTGAGACTTCGA 206391 | ||| | |||||| || Sbjct 43210 TTAGTTCTTAGACTTAGA 43193 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || ||| | ||||| ||| ||||||| || | ||| || || Sbjct 43846 ACTGGTAAGACCATTACTCTTGAAGTTGAAGGTTCTGATACCATTGAAAACGTTAAAACC 43787 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| |||||||| ||| || || ||||||||||| |||||||| || Sbjct 43786 AAGATTCAAGACAAAGAAGGTATTCCACCCGATCAACAAAGACTTATTTTCGCCGGTAAA 43727 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || || ||||| || | ||||| | || || ||| |||| ||||| ||||| || || Sbjct 43726 CAATTAGAAGACGGTCGTACTTTATCTGACTATAACATCCAAAAAGAATCTACCCTCCA 43668 >seq79 Length=61457 Score = 111 bits (122), Expect = 4e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || || ||||| || ||| | ||||| ||| |||| ||||| | ||| Sbjct 10511 CAAAACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGTTCAGACACCATTGAAAA 10452 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||| | ||| |||||||| |||||||| ||| || || ||| | | |||| Sbjct 10451 TGTTAAAACTAAA-ATTCAAGACAAAGAAGGTATTCCACCCGATCAACAACGTTTAATCT 10393 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | || || ||||| ||||||||||| | ||||| | ||||||||| |||| ||||| | Sbjct 10392 TTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTATCTGATTACAACATCCAAAAAGAAT 10333 Query 206363 CTACTCTTCA 206372 ||||||| || Sbjct 10332 CTACTCTCCA 10323 Score = 100 bits (110), Expect = 7e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || || || || || ||| | ||||| ||| |||| ||||| | ||| Sbjct 10967 CAAAACCTTGACTGGTAAGACTATTACTCTTGAAGTCGAAGGTTCAGACACCATTGAAAA 10908 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| |||||||| || || || ||| | | || || Sbjct 10907 CGTTAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAACAACGTTTAATTTT 10848 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || || |||||||| || ||||| | || |||||| |||| ||||| || Sbjct 10847 TGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAACATCCAAAAAGAATC 10788 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||| | || | |||||| || Sbjct 10787 TACTCTTCATTTAGTCCTCAGACTTAGA 10760 >seq298 Length=27992 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 206196 AGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAA 206255 ||| ||||| || || | ||||| ||| |||| || || ||||| || ||| || Sbjct 13375 AGGTAAAACTATTACCCTCGAAGTTGAAGGTTCCGATACCATCGAAAATGTCAAGGCTAA 13316 Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 || ||||| |||||||| || || || |||||||||||||| || || || || Sbjct 13315 AATCCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACA 13256 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 || ||||| || | ||||| ||||||||||| |||| ||||| ||||| |||||| | Sbjct 13255 ATTAGAAGACGGTCGTACTTTATCCGATTACAACATCCAAAAAGAATCTACCCTTCACTT 13196 Query 206376 TGTTTTGAGACT 206387 || | ||||| Sbjct 13195 AGTCCTCAGACT 13184 >seq1179 Length=2421 Score = 104 bits (114), Expect = 6e-17 Identities = 152/211 (72%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || ||||| ||||| | ||||| ||| |||| || ||| | Sbjct 2211 TTTTGTCAAGACTTTGACTGGTAAAACTATCACCCTTGAAGTTGAAGGTTCCGATACAAT 2270 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 || || ||| | ||| |||||||| |||||||| ||| || || ||||||| Sbjct 2271 TGATAATGTTAAAACTAAA-ATTCAAGATAAAGAAGGTATTCCACCCGATCAACAAAGAC 2329 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 |||| || || || || || ||||||||||| || || || | || || ||| | || | Sbjct 2330 TTATTTTTGCAGGTAAACAATTGGAAGATGGTAGAACCTTATCTGACTATAACATTCAAA 2389 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 |||| || ||||||||| | || | ||||| Sbjct 2390 AAGAATCCACTCTTCACTTGGTACTTAGACT 2420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181802205526988