Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq79 98.7 9e-16 seq57 95.1 1e-14 seq1179 91.5 1e-13 >seq79 Length=61457 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || |||||||| ||||||||||| | ||| | |||||| Sbjct 11001 ACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAGGTTCTACCATCTTCT 11060 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | |||||||||| | |||||| ||| |||||||| || || || |||||||| || | Sbjct 11061 AATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGA 11120 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | ||| | |||||| | || ||||| | || | ||||| Sbjct 11121 ATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACTTCAAGGGTGATGGTTTTG 11180 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | |||||| | ||||| ||||| Sbjct 11181 CCAGTTAAAGTTTTAACAAAAATTTGCAT 11209 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| |||||||| || | ||||| |||||| | || ||||| | | Sbjct 10332 GATTCTTTTTGGATGTTGTAATCAGATAAAGTACGACCATCTTCCAATTGCTTACCAGCA 10391 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||||| ||| |||||||| || || || |||||||| || |||||| |||| ||| Sbjct 10392 AAGATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTGAATTTTA-GTTTTAAC 10450 Query 132050 -TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | ||| | || || | || ||||| | || | ||||||||||||| ||||| Sbjct 10451 ATTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATGGTTTTACCAGTCAAGGTTTT 10510 Query 132109 TATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 10511 GACGAAAATTTGCAT 10525 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| ||||| | | || |||||||| ||||||||||| | ||||| ||||| Sbjct 10544 AACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTACGACCGTCTTC 10603 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||||| | || || | |||||||| || || || |||||||| || Sbjct 10604 TAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTG 10663 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| || | | ||| | |||||| | || ||||| | || | ||||| Sbjct 10664 AATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCAACTTCAAGGGTGATGGTTTT 10723 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| | |||||| | |||||| ||||| Sbjct 10724 ACCAGTTAAAGTTTTGACGAAAATTTGCAT 10753 >seq57 Length=71319 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| ||||| | | || || ||||| ||||||||||| | ||||| ||| || Sbjct 43433 AACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGACCATCCTC 43492 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||| | | |||||| ||| |||||||| || || || |||||||| || | Sbjct 43493 CAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTC-TT 43551 Query 132034 AATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTT 132092 | |||| |||| ||| | ||| | || || | || ||||| | || | |||| Sbjct 43552 GAATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCCTTCTACTTCAAGAGTAATGGTTT 43611 Query 132093 TACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| |||||||| | ||||| ||||| Sbjct 43612 TACCAGTGAGAGTTTTAACAAAAATTTGCAT 43642 >seq1179 Length=2421 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| ||||| | | || |||||||||||||||||||| || || | ||||| Sbjct 2184 AACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTC 2125 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||| | | |||||| ||| |||||||| || || || ||||||||||| Sbjct 2124 CAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTG 2065 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| || | | || | ||||| | || ||||| | || | ||||| Sbjct 2064 AATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAACTTCAAGGGTGATGGTTTT 2005 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| | ||||| | |||||| ||||| Sbjct 2004 ACCAGTTAAGGTTTTAACGAAAATTTGCAT 1975 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||||||||| ||||| | ||| | |||||| | |||||||| | | Sbjct 2396 GATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTACCATCTTCCAATTGTTTACCTGCA 2337 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | |||||||| || || || ||||||||||| |||||| |||| ||| Sbjct 2336 AAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATCTTGAATTTTA-GTTTTAAC 2278 Query 132050 TGT-TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | ||||||| || ||||| | || | ||||||||||||| ||| || Sbjct 2277 ATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGTTTTACCAGTCAAAGTCTT 2218 Query 132109 TATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 2217 GACAAAAATTTGCAT 2203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476603884018080