Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq79 134 1e-26 seq57 134 1e-26 seq1179 125 6e-24 seq778 109 5e-19 seq298 100 3e-16 >seq79 Length=61457 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| ||||| || ||| | ||||| | ||||| |||| | Sbjct 10753 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 10694 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | ||||| |||||| || ||||| ||||| || |||||||| Sbjct 10693 GATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 10634 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||||||||| || ||| |||||| | ||||| | | | | | | || ||||| Sbjct 10633 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACAAC 10574 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| || | |||||||| | ||| | ||||| || Sbjct 10573 ATCCAAAAAGAATCTACTCTCCATTTAGTTCTCAGACTCAGAGGTGG 10527 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| ||||| || ||| | ||||| | |||||||||| | Sbjct 11209 ATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAAGGCTCT 11150 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | ||||| |||||| || ||||| ||||| || |||||||| Sbjct 11149 GATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 11090 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | | ||| |||||| | ||||||| ||||| | || ||||| Sbjct 11089 CAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGACTACAAC 11030 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||||||||| ||||||| || | ||||| ||||| || Sbjct 11029 ATCCAAAAAGAATCCACTCTTCATTTGGTCCTTAGATTAAGAGGTGG 10983 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| || || || || | || || | |||||||||| | Sbjct 10297 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACCCTTGAAGTCGAAGGCTCT 10238 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||| ||| ||||| || ||||| || |||||||| Sbjct 10237 GATACCATTGAAAACGTTAAGACAAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 10178 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||||||||| || ||| |||||| | ||||| | | | | | | || || || Sbjct 10177 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 10118 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 |||||||| |||||||| | |||||||| | ||| | ||||| ||||| Sbjct 10117 ATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGACTTAGAGGTGGAAA 10068 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| || || || || | || || | |||||||||| Sbjct 10981 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACTCTTGAAGTCGAAGGTTCA 10922 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || || ||||| ||||| || |||||||| Sbjct 10921 GACACCATTGAAAACGTTAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 10862 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | ||| |||||| | ||||||| ||||| | | || ||||| Sbjct 10861 CAACGTTTAATTTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 10802 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| || |||||||||| | ||| | ||||| || Sbjct 10801 ATCCAAAAAGAATCTACTCTTCATTTAGTCCTCAGACTTAGAGGTGG 10755 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| || || || ||| | || || | |||||||||| Sbjct 10525 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGTTCA 10466 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| |||||| || ||||| ||||| || |||||||| Sbjct 10465 GACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATTCCACCCGATCAA 10406 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | | || || ||| | ||||||| | | | | | |||||||| Sbjct 10405 CAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTATCTGATTACAAC 10346 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| || | |||||||| | ||| | ||||| || Sbjct 10345 ATCCAAAAAGAATCTACTCTCCATTTAGTCCTCAGACTCAGAGGTGG 10299 >seq57 Length=71319 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| | || || | |||||||||| Sbjct 44326 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACCCTTGAAGTCGAAGGTTCT 44267 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || || ||| ||||| || ||||| || |||||||| Sbjct 44266 GATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 44207 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| | || |||||| | ||||||| ||||| | | || |||||| Sbjct 44206 CAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAT 44147 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||||||||| |||||||||| | ||| | ||||| || Sbjct 44146 ATTCAAAAAGAATCCACTCTTCATTTAGTCCTCAGACTCAGAGGTGG 44100 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || || || ||| | || || | |||||||||| | Sbjct 44098 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGCTCA 44039 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || || ||| || ||||| ||||| || |||||||| Sbjct 44038 GACACTATTGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43979 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| || ||| |||||| | ||||||| ||||| | | |||||||| Sbjct 43978 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGATTACAAC 43919 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||||||||| |||||||||| | ||| | ||||| || Sbjct 43918 ATCCAAAAAGAATCCACTCTTCATTTAGTTCTTAGACTTAGAGGTGG 43872 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || || || || | || || |||||||||||| Sbjct 43414 ATGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACCCTCGAAGTCGAAGGTTCT 43355 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || || ||| ||||| || ||||| || |||||||| Sbjct 43354 GATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 43295 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 ||| | | |||| || ||| |||||| | ||||||| | | |||| ||||||| Sbjct 43294 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGACGTACCTTGTC--TGATTACA 43237 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| ||||||||||| || | |||||||| | ||| | ||||| || Sbjct 43236 ATATCCAAAAAGAATCTACTCTCCATTTAGTTCTTAGACTTAGAGGTGG 43188 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || || || || | || || | ||||| |||| Sbjct 43870 ATGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACTCTTGAAGTTGAAGGTTCT 43811 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| || ||| || ||||| ||||| || |||||||| Sbjct 43810 GATACCATTGAAAACGTTAAAACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43751 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| || ||| |||||| | ||||| | | | | | | || || || Sbjct 43750 CAAAGACTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 43691 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| ||| | |||||||| | ||| | ||||| || Sbjct 43690 ATCCAAAAAGAATCTACCCTCCATTTAGTCCTCAGACTCAGAGGTGG 43644 >seq1179 Length=2421 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| ||||| || ||| | ||||| | ||||| |||| | Sbjct 1975 ATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 2034 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || |||||| |||||||| ||||| || |||||||| Sbjct 2035 GATACAATTGATAACGTCAAGACTAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 2094 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | | || |||||| | ||||| | ||||| | | || ||||| Sbjct 2095 CAACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGACTACAAC 2154 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||||||||| |||||||||| | ||||| ||||| || Sbjct 2155 ATTCAAAAAGAATCCACTCTTCATTTAGTTCTCAGATTAAGAGGTGG 2201 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || || ||| | ||||| | ||||| |||| | Sbjct 2203 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACTATCACCCTTGAAGTTGAAGGTTCC 2262 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| |||||| |||||||| ||||| || |||||||| Sbjct 2263 GATACAATTGATAATGTTAAAACTAAAATTCAAGATAAAGAAGGTATTCCACCCGATCAA 2322 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| | || |||||| | ||||||| ||||| | || || || Sbjct 2323 CAAAGACTTATTTTTGCAGGTAAACAATTGGAAGATGGTAGAACCTTATCTGACTATAAC 2382 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||||||||||||||| |||| || || Sbjct 2383 ATTCAAAAAGAATCCACTCTTCACTTGGT 2411 >seq778 Length=8042 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 25169 AACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 || ||||||||| | || || ||||| ||||| || || | ||||| ||||||||||| Sbjct 4924 AATAACATGCAAATCTTCGTTAAAACCTTAACTGGTAAGACCATCACTCTCGAAGTCGAA 4865 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 | || || ||||| | || || || || || ||||| ||||| || ||| Sbjct 4864 GGTTCTGACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCC 4805 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 ||||| ||| | | || | | ||| |||||| | ||||||| ||||| | | || Sbjct 4804 GATCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGAC 4745 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || ||||||||||| ||| | || ||||| | ||| | ||||| || Sbjct 4744 TACAACATCCAAAAAGAATCAACCCTCCACTTAGTTCTCAGACTTAGAGGTGG 4692 >seq298 Length=27992 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 25202 GGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAA 25261 || ||| | || || ||||||| |||| |||||| ||||| | || || ||| Sbjct 13374 GGTAAAACTATTACCCTCGAAGTTGAAGGTTCCGATACCATCGAAAATGTCAAGGCTAAA 13315 Query 25262 ATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAA 25321 || || ||||| ||||| || |||||||| |||||||| || | | || |||||| Sbjct 13314 ATCCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACAA 13255 Query 25322 CTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTA 25381 | ||||| | | | | | | ||||||||| || ||||||||||| ||| |||| ||| Sbjct 13254 TTAGAAGACGGTCGTACTTTATCCGATTACAACATCCAAAAAGAATCTACCCTTCACTTA 13195 Query 25382 GTGTTAAGATTGAGAGGAGG 25401 || | ||| | ||||| || Sbjct 13194 GTCCTCAGACTCAGAGGTGG 13175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445087567800960