Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq79 123 2e-23 seq57 111 1e-19 seq1179 109 4e-19 seq298 96.9 3e-15 >seq79 Length=61457 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||||||||| || |||||||| ||||| ||| | ||| ||| | Sbjct 11210 AATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAAGGCTC 11151 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | || || |||||| ||||||||||| | || ||||| Sbjct 11150 TGATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCA 11091 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | | || | ||| || ||||||||||||||| || ||| | || ||||| Sbjct 11090 ACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGACTACAA 11031 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| ||||||||||| || || ||||| || | || ||| |||| || Sbjct 11030 CATCCAAAAAGAATCCACTCTTCATTTGGTCCTTAGATTAAGAGGTGG 10983 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || ||||| || ||||| || ||||| ||| | ||| ||| | Sbjct 10753 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 10694 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || || |||||| ||||||||||| | || |||||| Sbjct 10693 GATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 10634 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| || |||| || || |||||||||||||| | ||| | || |||||| Sbjct 10633 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACAAC 10574 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || |||||||||||||| || |||||||| Sbjct 10573 ATCCAAAAAGAATCTACTCTCCATTTAGT 10545 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || ||||| |||||||| ||||| ||||| | ||| ||| Sbjct 10981 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACTCTTGAAGTCGAAGGTTCA 10922 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || || || || ||||||||||| | || |||||| Sbjct 10921 GACACCATTGAAAACGTTAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 10862 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| || ||||||||||||||| || |||| | || |||||| Sbjct 10861 CAACGTTTAATTTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 10802 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || |||||||||||||| || |||||||| Sbjct 10801 ATCCAAAAAGAATCTACTCTTCATTTAGT 10773 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || ||||| |||||||| ||||| |||||| | ||| ||| | Sbjct 10297 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACCCTTGAAGTCGAAGGCTCT 10238 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || || ||| ||| || || ||||| | || |||||| Sbjct 10237 GATACCATTGAAAACGTTAAGACAAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 10178 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| || |||| || || |||||||||||||| | ||| | || || ||| Sbjct 10177 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 10118 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||| ||||| || || |||||||| Sbjct 10117 ATTCAAAAGGAATCCACTCTCCATTTAGT 10089 >seq57 Length=71319 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| ||||| || |||||||| ||||||||||| | ||| ||| Sbjct 43870 ATGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACTCTTGAAGTTGAAGGTTCT 43811 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| || ||| ||||||||||| | || |||||| Sbjct 43810 GATACCATTGAAAACGTTAAAACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43751 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| ||||||| || || |||||||||||||| | ||| | || || ||| Sbjct 43750 CAAAGACTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 43691 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || |||||||||||||| || |||||||| Sbjct 43690 ATCCAAAAAGAATCTACCCTCCATTTAGT 43662 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || || || |||||||| || |||||||| | ||| ||| | Sbjct 44098 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGCTCA 44039 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || || || ||| ||||||||||| | || |||||| Sbjct 44038 GACACTATTGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43979 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| || || ||||||||||||||| || |||| | ||||||||| Sbjct 43978 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGATTACAAC 43919 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||||||||| || || |||||||| Sbjct 43918 ATCCAAAAAGAATCCACTCTTCATTTAGT 43890 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||||||||| | ||||| || ||||||||| | ||| ||| Sbjct 44326 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACCCTTGAAGTCGAAGGTTCT 44267 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | | | | || || || ||| || || ||||| | || |||||| Sbjct 44266 GATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 44207 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| ||||||| ||| || ||||||||||||||| || |||| | || ||||| Sbjct 44206 CAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAT 44147 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||||||||| || || |||||||| Sbjct 44146 ATTCAAAAAGAATCCACTCTTCATTTAGT 44118 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||||||||| | ||||| || |||||||| | ||| |||| | Sbjct 43642 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACTCTTGAAGTAGAAGGCTCA 43583 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||| |||||| ||||||||||| | || |||||| Sbjct 43582 GACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 43523 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || |||||||| || ||| | ||| | || |||||| Sbjct 43522 CAACGTTTAATCTTTGCTGGTAAACAATTGGAGGATGGTCGTACTTTATCTGACTACAAC 43463 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||| |||||||| || |||||||| Sbjct 43462 ATCCAAAAGGAATCTACTCTCCATTTAGT 43434 >seq1179 Length=2421 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| |||||||| || ||||| || ||||| ||| | ||| ||| | Sbjct 1974 AATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTC 2033 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | || || |||||| || |||||||| | || ||||| Sbjct 2034 TGATACAATTGATAACGTCAAGACTAAAATTCAAGATAAAGAAGGTATCCCACCCGATCA 2093 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | | || | ||| || |||||||| ||||| || |||| || || ||||| Sbjct 2094 ACAACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGACTACAA 2153 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| ||||||||||| || || |||||||| | || ||| |||| || Sbjct 2154 CATTCAAAAAGAATCCACTCTTCATTTAGTTCTCAGATTAAGAGGTGG 2201 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || |||||||| || || || ||| | ||| ||| | Sbjct 2203 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACTATCACCCTTGAAGTTGAAGGTTCC 2262 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| || |||||||| | || |||||| Sbjct 2263 GATACAATTGATAATGTTAAAACTAAAATTCAAGATAAAGAAGGTATTCCACCCGATCAA 2322 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| ||||||| ||| || |||||||| |||||| || ||| | || || ||| Sbjct 2323 CAAAGACTTATTTTTGCAGGTAAACAATTGGAAGATGGTAGAACCTTATCTGACTATAAC 2382 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469 || ||||||||||| || || || || ||| Sbjct 2383 ATTCAAAAAGAATCCACTCTTCACTTGGTA 2412 >seq298 Length=27992 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | ||| ||||||||||| ||||| | ||| || |||||||||||| Sbjct 13308 GACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACAATTAGAA 13249 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGT 106468 || | ||| | |||||||||||| |||||||||||||| || || ||||| Sbjct 13248 GACGGTCGTACTTTATCCGATTACAACATCCAAAAAGAATCTACCCTTCACTTAGT 13193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402323578634624