Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq697 199 6e-45 seq2 127 3e-23 >seq697 Length=10231 Score = 199 bits (220), Expect = 6e-45 Identities = 289/404 (72%), Gaps = 7/404 (2%) Strand=Plus/Plus Query 1455907 TTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAG 1455966 |||||||| ||||| ||||| || || || || || ||| ||||||| || Sbjct 5524 TTTTTCGCTGCCAGTGATGGTATTGTCAATGAAAATCTTGCCACAAAGTTTATGAGTGAA 5583 Query 1455967 GTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCAC 1456026 || ||| | |||||||| | | || || || ||||| || ||||| ||||||||||| Sbjct 5584 GTTCAAATTCCAGAGGCTAGATGTTTCTATGGCTTCCAAATTGCCATTGAAAACATCCAT 5643 Query 1456027 TCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCAC 1456086 || || |||||| ||| |||||||||||||| || | ||| || || ||| | | Sbjct 5644 TCAGAGACCTACAGTCTCTTGATCGACACCTACATCCAAGACAGCGTGGAAAAGAGCAAA 5703 Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146 || || ||||||||| || | || | |||| || |||||||||||||| ||| Sbjct 5704 CTATTCAACGCCATCGAGACCATCCCCTGTGTGAAAAAGAAGGCCGACTGGGCATTGAGA 5763 Query 1456147 TGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCG 1456205 ||||||| ||| || || |||||||| || | || | |||||||| ||||| Sbjct 5764 TGGATCACCAA-CAGCAAATC----ATTTGCCGAACGTTTAGTTGCCTTTGCCGCCGTCG 5818 Query 1456206 AGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCA 1456265 |||| ||||||||| |||||||| ||| | ||||||||||||||||| || || | | Sbjct 5819 AGGGTATCTTTTTCAGCGGCAGTTTTTGCTCTATCTTTTGGCTCAAGAAACGTGGTTTGA 5878 Query 1456266 TGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||||||| || || ||||| | |||||||| ||||| Sbjct 5879 TGCCCGGT-TTGACATTCTCTAACGAGCTCATCAGTCGTGACGA 5921 >seq2 Length=160969 Score = 127 bits (140), Expect = 3e-23 Identities = 186/263 (71%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || || ||||| |||||||| | || || || ||| |||| || || || || Sbjct 38367 GCCACCCCCACCCTCTTTAACTCGGGTACACCCAACCCTCAGATGTCAAGTTGTTTCCTC 38426 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 || | ||||||| || ||||| || || ||||||||||| ||||| ||||| || ||| Sbjct 38427 GTGCAAATGAAGGAAGACTCGATAGACGGTATCTATGACACTCTCAAACAGTGTGCCCTC 38486 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 ||| || | ||||| ||||| ||| | ||| |||||| | | ||| || Sbjct 38487 ATCAGTAAATCTGCCGGTGGCATTGGTATCGCCTGTCACAAGATCAGAGCCAGCAGCAGT 38546 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 || | |||||||||||| |||||||| |||| ||||||||||| || ||||| Sbjct 38547 TATATCCGTGGCACCAACGGCACATCCAACGGTATTGTCCCCATGCTTCGTGTCTTTAAT 38606 Query 260159 GACACGGCGCGCTACGTCGACCA 260181 ||||| || | ||||||||||| Sbjct 38607 GACACTGCCAGATACGTCGACCA 38629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177692757142936