Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq697 228 1e-54 seq2 136 5e-27 >seq697 Length=10231 Score = 228 bits (252), Expect = 1e-54 Identities = 414/596 (69%), Gaps = 11/596 (2%) Strand=Plus/Minus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 || ||||| |||| || || || ||||| || | ||| || | |||||||| ||||| Sbjct 5948 AAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTC 5889 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAA-AA 39732 | || ||||| | |||||| || ||||||||||| || | ||||||| | | | || Sbjct 5888 AAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAG-AGCAAAAACTGCCGCTGAA 5830 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790 ||||| || || || || ||||| ||||| | | || | | | ||| | | Sbjct 5829 AAAGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGC-TGTTGG 5771 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 || ||||| || |||||| || || ||||| || ||||| || || || || || || Sbjct 5770 TG-ATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGATGGCG 5712 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 || || || | ||||| | || |||| | || || || || || ||||| || Sbjct 5711 TTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGACTGTAG 5652 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970 | |||||||||||||||||||| || || || || || || |||||||| || || | | Sbjct 5651 GTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCCTCTGGA 5592 Query 39971 ATTTGTACCTCTGAACAAAATCTTTCCGCCAA-ATTTTCATTCACTATTCCATCACTAGC 40029 ||||| || || || || |||| | ||| ||||||||| || || |||||||| || Sbjct 5591 ATTTGAACTTC-ACTCATAAACTTTGTGGCAAGATTTTCATTGACAATACCATCACTGGC 5533 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATT 40086 || ||||| ||||| |||| || ||||| ||| | | ||| || || Sbjct 5532 AGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAATTTCTTGTT 5473 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 ||| || |||| |||| || | ||| | |||||| ||||||||||| || || || Sbjct 5472 CCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTGGCTTCAGC 5413 Query 40147 CTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTAT 40202 | ||||||||| |||||||||||| | || ||||| || | |||||||||| Sbjct 5412 TTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAATCTAT 5357 >seq2 Length=160969 Score = 136 bits (150), Expect = 5e-27 Identities = 384/587 (65%), Gaps = 2/587 (0%) Strand=Plus/Minus Query 69542 CCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTT 69601 |||| ||||| ||| || ||||| | | ||||| | | | | || |||| || Sbjct 38844 CCAAGCCAGGGGCTTCGTTGGGACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTT 38785 Query 69602 TCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCAT 69661 |||||| || || | ||| || || |||||| ||||||| ||| |||| || | Sbjct 38784 CCATAAAGAGGTCACTGACCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTT 38725 Query 69662 TTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 69721 | || || ||||| | ||||| |||||| | |||||| | |||||||| || | | Sbjct 38724 TGCCGTGGTTCTTTTTCAAATCGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGT 38665 Query 69722 ATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTAT 69781 | | || | | | ||| || || || || || || | |||||||||||||| || Sbjct 38664 AGACGGCAAAGGCACCCTTTCTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCAT 38605 Query 69782 TATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAAC 69841 || |||| | ||||| || | |||||| || ||| | || || || ||| ||||||| Sbjct 38604 TAAAGACACGAAGCATGGGGACAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAAC 38545 Query 69842 TTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTA 69901 | | || || | || || | | | ||| || || || || |||| ||| | Sbjct 38544 TGCTGCTGGCTCTGATCTTGTGACAGGCGATACCAATGCCACCGGCAGATTTACTGATGA 38485 Query 69902 GAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAA 69961 | ||||| |||| | |||||||| ||||| ||||| || || |||| | | | Sbjct 38484 GGGCACACTGTTTGAGAGTGTCATAGATACCGTCTATCGAGTCTTCCTTCATTTGCACGA 38425 Query 69962 GAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGT 70021 | ||||| || ||||| ||| | | || |||| ||||| | || || | |||| Sbjct 38424 GGAAACAACTTGACATCTGAGGGTTGGGTGTACCCGAGTTAAAGAGGGTGGGGGTGGCGT 38365 Query 70022 GAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCAC 70080 | || || |||| || |||| ||| || || | ||| | || | ||| | | Sbjct 38364 GGGTAAAGAGCTTTTGGCTGAGGAGATCGTAGGTCTCGAGAGCGGCGTCCAAATCGTCGC 38305 Query 70081 TGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 | || || || | || ||||||||| ||||| || || || || || Sbjct 38304 CG-TGGATGCCCAACGAGACACGCATTAACATGTGTTGGGGACGCTC 38259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686898255949920