Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq697 212 5e-50 >seq697 Length=10231 Score = 212 bits (234), Expect = 5e-50 Identities = 415/600 (69%), Gaps = 15/600 (3%) Strand=Plus/Plus Query 43696 TAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACA 43755 ||| ||||| | || ||||| || | |||| |||||| | ||||||||| |||| | Sbjct 5358 TAGATTTGTGTTATTCCCAATCAAACACAATGATATATGGAAGATGTACAAACAAGCTGA 5417 Query 43756 GGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAGCACATTGGATT- 43813 || ||||||||||| |||||| |||||||| | ||| || | | |||||| Sbjct 5418 AGCCAGTTTTTGGACAGCCGAAGAAATTGATTTGGCACCAGATCTCAACG-ATTGGAACA 5476 Query 43814 -GCATTAAAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGA 43871 | | | ||| | || ||| |||| ||||| |||||||| ||||| ||||| | Sbjct 5477 AGAAATTAAATGATAACGAACGTTATTTCATATCCAATGTTTTGGCCTTTTTCGCTGCCA 5536 Query 43872 GCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAG 43931 | || || || |||||||||||| | | | |||| | ||||||||| | |||| Sbjct 5537 GTGATGGTATTGTCAATGAAAATCTTGCCACAAAGTTTATGAGTGAAGTTCAAATTCCAG 5596 Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991 | || ||||||| ||||| || ||||||||||| ||||| || ||||| || | |||| Sbjct 5597 AGGCTAGATGTTTCTATGGCTTCCAAATTGCCATTGAAAACATCCATTCAGAGACCTACA 5656 Query 43992 GTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGA 44051 |||| |||| || || |||||| |||| | || ||| | | || || || | Sbjct 5657 GTCTCTTGATCGACACCTACATCCAAGACAGCGTGGAAAAGAGCAAACTATTCAACGCCA 5716 Query 44052 TAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCA 44110 | || | || |||| | | ||| | || || |||||||| | | |||||| | || Sbjct 5717 TCGAGACCATCCCCTGTG-TGAAAAAGAAGGCCGACTGGGCATTGAGATGGATCA--CCA 5773 Query 44111 AATG--ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 | | | || |||| ||||| | || || ||||| | || || || || | |||| Sbjct 5774 ACAGCAAATCATTTGCCGAACGTTTAGTTGCCTTTGCCGCCGTCGAGGGTATCT--TTTT 5831 Query 44169 CAG-GATCGTTTGCG-GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGAC 44226 ||| | |||| | | || |||||| | |||||||| ||||||||||| || ||||| Sbjct 5832 CAGCGGCAGTTTTTGCTCTATCTTTTGGCTCAAGAAACGTGGTTTGATGCCCGGTTTGAC 5891 Query 44227 GTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 || || || ||| | || |||||||| || || | || ||| | ||||| || ||||| Sbjct 5892 ATTCTCTAACGAGCTCATCAGTCGTGACGAGGGTCTCCACTGCAACTTTGCCTGTTTGTT 5951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397450051574140