Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq79 122 7e-23 seq57 116 3e-21 seq1179 96.9 3e-15 seq778 93.3 4e-14 >seq79 Length=61457 Score = 122 bits (134), Expect = 7e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 || ||||| | ||||| |||||||| || |||||||| | | | ||| | | ||||| Sbjct 10773 ACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTAC-CATCTTC 10831 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||||||||| |||| | ||| |||||||| || || | ||| ||||| || Sbjct 10832 TAATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTG 10891 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| | || | | |||| | ||||||| |||| ||||| ||||| |||| || Sbjct 10892 GATCTTGGTCTTAACGTTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATAGTCTT 10951 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||||| || || ||||||||| Sbjct 10952 ACCAGTCAAGGTTTTGACGAAAATTTGCATA 10982 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 || ||||| | ||||| |||||||| || |||||||| | | | || || ||||||| Sbjct 10545 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTA-CGACCGTCTTC 10603 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||||||||| ||||||| | |||||||| || || | ||| ||||| || Sbjct 10604 TAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTG 10663 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || | || | |||| | ||| || | | |||||||||| || || || | ||| Sbjct 10664 AATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCAACTTCAAGGGTGATGGTTTT 10723 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || | |||||| || || ||||||||| Sbjct 10724 ACCAGTTAAAGTTTTGACGAAAATTTGCATA 10754 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 || ||||| | || || || |||||||| || ||||| | | | || || ||||||| Sbjct 10089 ACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAGTCAGATAAAGTA-CGACCGTCTTC 10147 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||||||||| ||||||| | |||||||| || || | ||| || ||||| Sbjct 10148 TAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCTTG 10207 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| | || | | |||| | || || | | |||| ||||| || || |||| || Sbjct 10208 AATCTTTGTCTTAACGTTTTCAATGGTATCAGAGCCTTCGACTTCAAGGGTAATAGTCTT 10267 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||||| || || ||||||||| Sbjct 10268 ACCAGTCAAGGTTTTGACGAAAATTTGCATA 10298 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | || || |||||||| || |||||||| | | | ||| | | ||||| Sbjct 11001 ACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAGGTTCTAC-CATCTTC 11059 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||||||||| | || | ||| |||||||| || || | ||| ||||| || Sbjct 11060 TAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTG 11119 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || | || | |||| | ||| || | | |||| ||||| || || || | ||| Sbjct 11120 AATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACTTCAAGGGTGATGGTTTT 11179 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || | |||||| ||||| |||||||| Sbjct 11180 GCCAGTTAAAGTTTTAACAAAAATTTGCAT 11209 >seq57 Length=71319 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 || ||||| | || || |||||||| || ||||| || | | | ||| | | ||||| Sbjct 43890 ACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTAC-CATCTTC 43948 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||||||||| |||| | ||| |||||||| || || | ||| ||||| || Sbjct 43949 TAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTG 44008 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| | || | | |||| | |||||||| | |||| ||||| ||||| || | ||| Sbjct 44009 AATCTTGGTCTTGACGTTTTCAATAGTGTCTGAGCCTTCGACTTCAAGAGTAATGGTTTT 44068 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| || || || || ||||||||| Sbjct 44069 ACCAGTCAAGGTCTTGACGAAAATTTGCATA 44099 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 || ||||| | ||||| |||||||| || || ||||| | | | || || ||||||| Sbjct 43662 ACTAAATGGAGGGTAGATTCTTTTTGGATGTTATAGTCAGATAAAGTA-CGACCGTCTTC 43720 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||||||||| |||| || | |||||||| || || | ||| ||||| || Sbjct 43721 TAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTGTCTTG 43780 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| |||| | | |||| | || || | |||||||||| ||||| || | || Sbjct 43781 AATCTTGGTTTTAACGTTTTCAATGGTATCAGAACCTTCAACTTCAAGAGTAATGGTCTT 43840 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| || || || || ||||||||| Sbjct 43841 ACCAGTCAAGGTCTTAACGAAAATTTGCATA 43871 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 || ||||| | || || |||||||||||||||||||| | | | ||| | | ||||| Sbjct 44118 ACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGATAAAGTT-CTACCATCTTC 44176 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||||| || |||| || | |||||||| || || | ||| || ||||| Sbjct 44177 TAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCTTG 44236 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| | || | |||| | || || | |||| ||||| || || || | ||| Sbjct 44237 AATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCAAGGGTAATGGTTTT 44296 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || |||||||| ||||| ||||||||| Sbjct 44297 ACCAGTGAGAGTTTTAACAAAAATTTGCATA 44327 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | ||||| |||||||| |||||||| || || | | || | ||||| Sbjct 43206 ACTAAATGGAGAGTAGATTCTTTTTGGATATTGTAATCAGACAAGGTACGTCCATCTTCT 43265 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||||||| |||| | ||| |||||||| || || | ||| || ||||| Sbjct 43266 AATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCCTTATCTTGA 43325 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | |||| | || || | |||| ||||| || || || | || Sbjct 43326 ATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCGAGGGTAATGGTCTTA 43385 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| || || || || ||||||||| Sbjct 43386 CCAGTCAAGGTCTTAACGAAAATTTGCATA 43415 >seq1179 Length=2421 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 |||||| || | || || ||||||||||| || ||||| | | | ||| | | |||| Sbjct 2412 TACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTT-CTACCATCTT 2354 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | |||||||| || |||| || | |||||||| || || | ||| |||||||| Sbjct 2353 CCAATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATCTT 2294 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 || || |||| | | || | || || | |||||||||| || || |||| || Sbjct 2293 GAATTTTAGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGTTT 2234 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || |||| ||| || ||||| ||||||||| Sbjct 2233 TACCAGTCAAAGTCTTGACAAAAATTTGCATA 2202 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || ||||||||||| |||||||| || | | ||||||| Sbjct 2183 ACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTCC 2124 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| || | || | ||| |||||||| || || | ||| |||||||| Sbjct 2123 AATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGA 2064 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || | || | | | || | || || | | |||||||||| || || || | ||| Sbjct 2063 ATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAACTTCAAGGGTGATGGTTTTA 2004 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | ||||| || || |||||||| Sbjct 2003 CCAGTTAAGGTTTTAACGAAAATTTGCAT 1975 >seq778 Length=8042 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || |||||||| || |||||||| | | | ||| | | ||||| | |||||||| Sbjct 4722 GTTGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTAC-CATCTTCTAATTGTTTACC 4780 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || | ||| |||||||| || || | ||| ||||| || ||||||| || Sbjct 4781 GGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTT 4840 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | |||| | ||||| | |||| ||||| ||||| || | || || || | || Sbjct 4841 GACGTTTTCGATGGTGTCAGAACCTTCGACTTCGAGAGTGATGGTCTTACCAGTTAAGGT 4900 Query 27230 TTTCACAAAGATTTGCAT 27247 ||| || ||||||||||| Sbjct 4901 TTTAACGAAGATTTGCAT 4918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424928040325536