Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 279 6e-70 seq171 95.1 2e-14 seq98 95.1 2e-14 seq269 89.7 6e-13 seq37 82.4 1e-10 >seq2 Length=160969 Score = 279 bits (308), Expect = 6e-70 Identities = 1197/1865 (64%), Gaps = 69/1865 (4%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 |||||||||||||| ||||||||||| || | |||||| | ||| | ||||| || | | Sbjct 40012 CGGAGATAGTACATACCGGTCTTGAGACCCTTTTTCCAGGAGTAAAAGTGCATCGATGTG 39953 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 || ||||| | || || | || |||| || | || || ||||||||||| ||| Sbjct 39952 AGTTTGGAAAAGGTGGGCTCAGCAATAAAGACATTGAAGCTCTGGCTTTGGTCAATAAAG 39893 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTAATTTCCCAAACTGTGCG 110541 || || | || ||||| ||||||| | ||| | ||||||||| ||||| Sbjct 39892 GCACCACGCTCGGCGGCCATGTCAATGAGGGTTCTTTGACG-AATTTCCCAGACTGTTTT 39834 Query 110542 ATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTT 110601 ||||| | |||| ||| || ||||| || |||| ||||| || || | Sbjct 39833 GTAGAGCTCTTTGAGATCGTCGGGGATTTCCTCAATATCTTGGAT---ACTGCCTCTGTG 39777 Query 110602 CACCATGAGATCCTTCAT-ATCCTTGG--ACCAGAGACCAATCTTCTTGAGGTCATTGAC 110658 | |||| | ||| | ||| ||| |||| ||||||| || | |||| || ||| Sbjct 39776 GAGAATGATTTGGTTCTTGATCTCTGGCGACCATAGACCAAGCTCCATGAGATCGGTGAG 39717 Query 110659 GAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGT 110718 ||| || || || |||||| || ||||| || | | | ||| ||||| | Sbjct 39716 GAGTTGTTTATTTACAATGGTGAATTCACCGGCCAACACACGACGACTGTAAATGTTGGA 39657 Query 110719 TGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 110778 ||||||||| |||||||| ||||| || || | ||||| | |||| ||| |||||||| Sbjct 39656 TGTGTATGGCTCAAAGCACTCATTGTTTCCGAGAATTTGAGAGGTGCTGGCGGTTGGCAT 39597 Query 110779 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATC 110838 ||| || |||||||||||||| | |||||| | ||||||| ||||||||| | Sbjct 39596 TGGGGCAATCAAAAGACTGTTTCTAAGACCGGTGGCCTTGATCTTTTCCTTGAGTTTGGC 39537 Query 110839 CCAGTCGTA--GTTGAGCTTG-GTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTG 110895 |||||| | || ||| | | || ||| ||||||||||| | || || | || | Sbjct 39536 CCAGTCCCAACGTGGAGATGGAGTGACAC---CCCACATGTCATATTGGAGGATACCCTT 39480 Query 110896 GGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 110955 || || || || || |||||||||||||||| ||| ||||| ||||||| ||| Sbjct 39479 AGAGGCTGGTGAGCCTTCAAAGGTTTCATAGGCACCGTGGGCAGCAGCCAACTCATTAGA 39420 Query 110956 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 111015 || || | || ||| |||||||| || | ||| | || | Sbjct 39419 GGCTGTGAGAGCGGCAAAATAGATGGTTTCGGCAATCTCACGATTGAGTGTGGCAGCGCC 39360 Query 111016 ATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAA 111075 | || ||||| | | || ||||| ||||| ||||||||||| | || | Sbjct 39359 AGTAGAGTCAAAAGGTAAACGAAGGGCGATAAAGACATCGGCGAGACCTTGGATGCCAAG 39300 Query 111076 ACCAATAGGTCTGTGTCGCATATTAGA---CTTTCGCGCAGTCTCAACGGGATAAAAATT 111132 |||||| |||||||||| ||| || || |||| | | | || ||||| | || Sbjct 39299 ACCAATGGGTCTGTGTCTCATGTTGGACACCTTTGATTCGGGC---ACTGGATAGTAGTT 39243 Query 111133 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192 ||||||||||| ||| ||||| ||||| | | ||| || | |||| || | || Sbjct 39242 TCTGTCAATGATCTTGTTGAGATTCTTGGTGATTACCTTGGTTACCTCATAGAGATGTTG 39183 Query 111193 ATAATCAAA------------------AGTGCGAGTCTCTTCATTG----ACATACTTTG 111230 || ||| | ||| || || | ||| ||||| || | Sbjct 39182 ATGGTCATATTCCTTTTCTTTGGGGTTGGTG-GAACCTTGTTTTTGGACAACATATTTGG 39124 Query 111231 GAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAA 111290 | | || || || |||||||||||||| ||| || || ||||| | | | Sbjct 39123 GCAAAGCAATAGAGGCCAAATTGCAAACGGCCACTTCCTCTGGCGAGGTGTATTGGACGA 39064 Query 111291 TTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGT 111350 ||||||| || | |||| || ||| || || | || | ||| || || | Sbjct 39063 TTTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGATTTTGAAT 39004 Query 111351 TGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAG 111410 |||| ||||| |||||||| ||| | || || || || || | || | || |||||| | Sbjct 39003 TGCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTCGAGAATGG 38944 Query 111411 CCTTCCAAACATCGGCGGC-TGGTACAATGGCGTTGGCCCG---TCCCTCCGCCTCGTAC 111466 | ||| | || ||| | | || || ||||| | | || ||||| Sbjct 38943 CAAACCAGAGGTCTTGGGCTTTGATCACACGC-TTGGCAAGATCTGGTGTGGCTTCGTA- 38886 Query 111467 TTTGTG-TAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGT 111524 || | | ||||| | |||||| || | | || |||| | || || || | || Sbjct 38885 TTGGAGATAGAGTTTTCTAAACTCTTC-GCTATGGCACTCGGCCAAGCCAGGGGCTTCGT 38827 Query 111525 CTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584 ||||| || || ||||| | | || ||| || | | ||| || ||||| | Sbjct 38826 TGGGACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGAGGTCACTGA 38767 Query 111585 TCCACAGGGATGAAAAGAGATCTCT---ACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 ||| |||| ||||||| ||||| | | |||||| | || ||||| | Sbjct 38766 CCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTG---CCGTGGTTCTTTT 38710 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 || || | ||||| | ||||| |||||||||||||| | ||||| || | | | Sbjct 38709 TCAAATCGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAAGGCAC 38650 Query 111702 CCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 |||||| | || |||| | || || | || ||| | ||||| || ||||||| Sbjct 38649 CCTTTCTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAGCA 38590 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 111818 | || | |||||| | ||| || || || || || ||| | | ||||||| Sbjct 38589 TGGGGACAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGGCTCT-- 38532 Query 111819 CATCATG-GATGTGC-ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876 ||| || || || || ||||| || || || | || ||| | ||||||| | Sbjct 38531 GATCTTGTGACAGGCGATACCAATGCCACCGGCAGATTTACTGATGAGGGCACACTGTTT 38472 Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTT-GTTGGCGATAAGGAAGCAACTGG 111935 ||||| |||||||||||| || ||||| ||||| || || | ||||| ||||| | Sbjct 38471 GAGAGTGTCATAGATACCGTCTATCGAGTCTTCCTTCATTTGC-ACGAGGAAACAACTTG 38413 Query 111936 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 111995 ||||||| || | |||||||| | || |||||||| || || ||||| | || | Sbjct 38412 ACATCTGAGGGTTGGGTGTACCCGAGTTAAAGAGGGTGGGGGTGGCGTGGGTAAAGAGCT 38353 Query 111996 CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 112055 |||| | ||||| ||||| | | | || | || || ||||||||||| | Sbjct 38352 TTTGGCTGAGGAGATCGTAGGTCTCGAGAGCGGCGTCCAAATCGTCGCCGTGGATGCCCA 38293 Query 112056 TTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAA 112115 | ||| ||||| ||||||| || || || |||| ||||| || | ||| | Sbjct 38292 ACGAGACACGCATTAACATGTGTTGGGGACGCTCAATGATCTGGCCATTGACTCTTTGCA 38233 Query 112116 GATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCGCTTCGTA- 112174 || || |||| || || |||| |||||| || || | ||| | || | ||| ||| Sbjct 38232 AGTAACTTCTCTCGAGTGTCTTGAAGCCAAAGAAATCATAGTCAAAATCTCTCTT-GTAG 38174 Query 112175 TCAAT 112179 ||||| Sbjct 38173 TCAAT 38169 >seq171 Length=42127 Score = 95.1 bits (104), Expect = 2e-14 Identities = 249/371 (67%), Gaps = 13/371 (4%) Strand=Plus/Minus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| | ||| || ||||| | ||| | ||| | ||||| | ||| ||||| || Sbjct 37520 ATCAAATCTACCGGGACGAAGTAAGGCTTGATCCAAAATATCTGGTCTATTGGTGGCGGC 37461 Query 11512 AATAACCACAATGCCAGTCTCATTGT--CAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 || || || | | | | | | ||| |||| |||||||| || | |||||||| Sbjct 37460 AAACACTACTACGTC--TTTGAGTGTAGCAAAACCATCCATTTCAACCAACAATTGATTC 37403 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA-CCAGCACTGCGT--TGCT-TGCC 11625 | || | |||||| ||||| || ||| || | | ||| | ||| | |||| | || Sbjct 37402 AAAGTGTTTTCTCTTTCATCGTT-GCTACCAGAGAAACCACCCTTGCCTCTTGCTCTACC 37344 Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 11685 | |||||||| ||||| || || |||||||||||| ||| | || |||||| Sbjct 37343 AATGGCATCAATTTCATCGATAAACACAATACATGGTGCATTCTTTTTAGCTTGTTCAAA 37284 Query 11686 GAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGA 11745 ||||| || || || | ||| ||||||||| |||| || ||||| | || |||| Sbjct 37283 TAGATCACGTACTCTAGCTGGACCTACACCAACATACATTTCAACAAAATCTGATCCAGA 37224 Query 11746 GCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 | | | | |||||| || |||| |||||| || | ||| || | | || || Sbjct 37223 --AGTTGAAAAGAATGGTACGTTTGCTTCACCTGCAGTTGCTTTTGCTAATAAAGTTTTA 37166 Query 11804 CCCGTACCTGG 11814 || |||||||| Sbjct 37165 CCTGTACCTGG 37155 >seq98 Length=57420 Score = 95.1 bits (104), Expect = 2e-14 Identities = 277/422 (66%), Gaps = 16/422 (4%) Strand=Plus/Minus Query 181631 ACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAAGTCTGG 181690 ||| ||||| || | ||||| || | |||||||| | | |||| | || || || || Sbjct 16978 ACCAATACCTTCAGAGCCATTGACCAATACCATTGGAATAATTGGAACATAGAATTCCGG 16919 Query 181691 TTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAGGATC--- 181747 | |||| || || || ||||||||||| | || || ||||| | || Sbjct 16918 CTGAATGCTATCACCTTCCTCTTCCAAGTAGTTTAAGAGAGGATCATCGAGTTCATTGTA 16859 Query 181748 -AAAGATCTTGCGAGCCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAAGCG- 181805 ||| ||| ||| ||| | || |||||||| || || || | | |||| Sbjct 16858 TAAATGTCTAACGACACTCTCT----AGCTTTGTGAAAATGTATCTTG---GGCTAGCGC 16806 Query 181806 --TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGT 181863 ||| |||||| ||||| |||||||||||||||| | | | || ||||| Sbjct 16805 AATCTGAACCACCTTGAAGACGAGTACCAAATTGACCACCGGCATATAATAGTGGAATGT 16746 Query 181864 TGTTTGAACCTGTATAGTCGTTG-GCCAACTTAACGATGGTATCCGCAAGGGACACTTCA 181922 | ||||| || |||| | ||| |||| ||| || || ||| | ||||| ||||| Sbjct 16745 TATTTGATCCAACATAG-CTTTGTGCCATCTTTACAATTGTAGCATTGAGGGAAGCTTCA 16687 Query 181923 CCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCA 181982 || ||||| || || | | || |||||||| | | ||| || || || || |||||| Sbjct 16686 CCATGGTGATAGGCAGTATGTTCAGCAACATAACCAGACAATTGAGCAACTTTAATTTCA 16627 Query 181983 TCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCA 182042 | || || | | |||||| ||||||| | ||| || || |||||||||||| Sbjct 16626 GAGGTTAGCTTTCTCTTGAAGCATGCATACAATATTTTTCTTTGGCCTGGCTTGAGACCA 16567 Query 182043 TC 182044 || Sbjct 16566 TC 16565 >seq269 Length=30927 Score = 89.7 bits (98), Expect = 6e-13 Identities = 214/321 (67%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || || |||||||| ||||| || || |||||| |||| ||||| | ||| || | Sbjct 29269 CCGACGGCATCAATTTCATCGATAAATACAATAGCTGGTGCGTTTTCTCTGGCCTCTTTA 29210 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 |||||||| | || | ||| ||| ||||| ||||||||||| | || | || || Sbjct 29209 AAGAGATCTCTTACACGACTGGGACCAACACCGACAAACATCTCGATGAAATCTGAACCA 29150 Query 11744 GAGCACTGGATGAATG-GGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802 | | || || || | ||||| | ||||| || |||| ||| | | |||||| Sbjct 29149 CTG-ATTGTATAAAAGTTTACATTGGCCTCACCAGCAGTGGCCTTGGCCAACAAGGTCTT 29091 Query 11803 TCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAA 11862 || || ||||| ||| | | | ||| || ||||||||| |||||| || Sbjct 29090 ACCAGTGCCTGGGGGACCAACCAAGATGGCACCCTTGGGGATCTTTGCACCAAGTCTCTT 29031 Query 11863 ATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTC 11922 ||| |||| || | |||||| || |||| || || || ||||||||| | || Sbjct 29030 GTATTTCTCTGGATTCTTGAGGAATGAAACAAATTCCATAATCTCTTCTTTGGCCTCCTC 28971 Query 11923 AATCCCCTCAACATCACTGAA 11943 || || ||||||| |||| Sbjct 28970 CATACCGGCAACATCCTTGAA 28950 >seq37 Length=80241 Score = 82.4 bits (90), Expect = 1e-10 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 9432 GGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGG 9491 || ||||| || || | | ||||||||||| || || || ||||| || | ||||||| Sbjct 19735 GGCAACATCAATGCCCAACGTGATTGGGGTCATGCCAAAGATTATGTCGAGGGTATGTGG 19794 Query 9492 CTCATGCTTCAACAAGAGGAAGCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCA 9551 |||||| | |||||||| || | || || ||||| | || || ||||| || ||| || Sbjct 19795 CTCATGTTACAACAAGACAAACCAGAAGATTATGTTTTGGCCACCGGTGAAACTCATCCA 19854 Query 9552 GTGAG 9556 || || Sbjct 19855 GTCAG 19859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628022359708800