Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 251 9e-62 seq171 87.8 2e-12 seq697 86.0 8e-12 seq269 84.2 3e-11 seq98 82.4 9e-11 >seq2 Length=160969 Score = 251 bits (278), Expect = 9e-62 Identities = 1182/1852 (64%), Gaps = 79/1852 (4%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||| |||||||| || |||||||| |||| ||||||| || | ||||| || | Sbjct 40012 CGGAGATAGTACATACCGGTCTTGAGACCCTTTTTCCAGGAGTAAAAGTGCATCGATGTG 39953 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | ||||| | ||| || | || |||| || | || ||| ||| || || ||| Sbjct 39952 AGTTTGGAAAAGGTGGGCTCAGCAATAAAGACATTGAAGCTCTGGCTTTGGTCAATAAAG 39893 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCACACAGTCCT 118015 || || || || ||||| ||||| | | ||| | |||||||| || || | Sbjct 39892 GCACCACGCTCGGCGGCCATGTCAATGAGGGTTCTTTGACGA-ATTTCCCAGACTGTTTT 39834 Query 118016 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTT 118075 |||||| | || | ||| || ||||| ||| | |||| |||||| || | | Sbjct 39833 GTAGAGCTCTTTGAGATCGTCGGGGATTTCCTCAATATCTTGGATACTGCCTCTG---TG 39777 Query 118076 GACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132 || |||| | | ||| || || ||||| ||||||| || ||||||| | Sbjct 39776 GAGAATGATTTGGTTCTTGATCTCTGGCGACCATAGACCAAGCTCCATGAGATCGGTGAG 39717 Query 118133 GAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 118192 ||| || ||||| |||| || ||||| || | || | || || |||| Sbjct 39716 GAGTTGTTTATTTACAATGGTGAATTCACCGGCCAACACACGACGACTGTAAATGTTGGA 39657 Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252 |||||||||||||||||||||||||| || | ||||| | ||| ||| || ||||| Sbjct 39656 TGTGTATGGCTCAAAGCACTCATTGTTTCCGAGAATTTGAGAGGTGCTGGCGGTTGGCAT 39597 Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTC 118312 || || || | ||| ||||| | ||||| | || | || ||||||||| | | Sbjct 39596 TGGGGCAATCAAAAGACTGTTTCTAAGACCGGTGGCCTTGATCTTTTCCTTGAGTTTGGC 39537 Query 118313 CCAGTCGTA--GTTGAGCTTT-GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTG 118369 |||||| | || ||| | || | ||| ||||| ||| | ||||||||||| | Sbjct 39536 CCAGTCCCAACGTGGAGATGGAGTGACACCC---CACATGTCATATTGGAGGATACCCTT 39480 Query 118370 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GA 118426 || ||||| || || ||||| || ||||| | || | | | ||||| || || Sbjct 39479 AGAGGCTGGTGAGCCTTCAAAGGTTTCATAGGCACCGTGGGCAGCAGCCAACTCATTAGA 39420 Query 118427 GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGC 118486 | || ||| || || ||| || ||||| ||| | ||| | || |||| Sbjct 39419 G---GCTGTGAGAGCGGCAAAATAGATGGTTTCGGCAATCTCACGATTGAGTG---TGGC 39366 Query 118487 CTCGTCGGAA---TCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGAC 118543 || | | | ||||| | | || ||||| ||||| ||||||||||||| Sbjct 39365 AGCGCCAGTAGAGTCAAAAGGTAAACGAAGGGCGATAAAGACATCGGCGAGACCTTGGAT 39306 Query 118544 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAG---CGGTCTCCACGGGATA 118600 || || ||||| || | |||||||| || ||| | | ||| | || ||||| Sbjct 39305 GCCAAGACCAATGGGTCTGTGTCTCATGTTGGACACCTTTGATTCGGGC---ACTGGATA 39249 Query 118601 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 118660 | || || || || | | | || ||||| ||||||| ||||| || | |||| || Sbjct 39248 GTAGTTTCTGTCAATGATCTTGTTGAGATTCTTGGTGATTACCTTGGTTACCTCATAGAG 39189 Query 118661 CTTTTCGTAATCAAAAC---------------TGC--GAGTCTCTTCATTG----ACATA 118699 | || | ||| | || || || | ||| ||||| Sbjct 39188 ATGTTGATGGTCATATTCCTTTTCTTTGGGGTTGGTGGAACCTTGTTTTTGGACAACATA 39129 Query 118700 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT-TATCA--GTGTA 118756 || || | || || || |||| ||| || || || | | |||| | | ||||| Sbjct 39128 TTTGGGCAAAGCAATAGAGGCCAAATTGCAAAC---GGCCACTTCCTCTGGCGAGGTGTA 39072 Query 118757 CTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 118816 | | ||||| ||||| | ||| || ||||||||| | ||| | |||||| || Sbjct 39071 TTGGACGATTTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGA 39012 Query 118817 CTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT 118876 |||| || || ||||| ||||| || ||| |||| || || || || |||||| | Sbjct 39011 TTTTGAATTGCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTC 38952 Query 118877 GAGAATAGCCTTCCAGACATCGGCAGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCTT--- 118932 |||||| || ||||| || ||| | || || ||||| | | | Sbjct 38951 GAGAATGGCAAACCAGAGGTCTTGGGCTTTGATCACACGC-TTGGCAAGATCTGGTGTGG 38893 Query 118933 CCTCGTACTTTGTG-TAGAGGGCTTCAAACTCTTCACCCACGGC-CTCTGAGAGCCCTGG 118990 | ||||| || | | ||||| | ||||||||| | | ||| ||| | | || || Sbjct 38892 CTTCGTA-TTGGAGATAGAGTTTTCTAAACTCTTCGCT-ATGGCACTCGGCCAAGCCAGG 38835 Query 118991 TGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 119050 || | | || || ||||| ||||| | | | ||| || | | ||| ||||| Sbjct 38834 GGCTTCGTTGGGACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGAG 38775 Query 119051 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 119110 ||| || |||||| || | ||||| || | | ||| || | || || || Sbjct 38774 GTCACTGACCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTT 38715 Query 119111 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 119170 ||| || | ||| || | ||||| |||||||| || |||| ||| || || | Sbjct 38714 CTTTTTCAAATCGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAA 38655 Query 119171 TGACCCCTTACGACGACCA--GCCT-GGTTTACATACCTCGCAGTGGCGTTAAATACACG 119227 | ||||| | ||| |||| ||| || || || |||||| | ||||| ||||| Sbjct 38654 GGCACCCTTTCTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACG 38595 Query 119228 AAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC 119287 |||||| || | ||||| | |||| ||| || || || || ||| | | |||| Sbjct 38594 AAGCATGGGGACAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGGC 38535 Query 119288 TCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTC 119347 ||||| | ||| | |||||||| || || || | || ||| | || |||| Sbjct 38534 TCTGATCTTGTGACAGGCGATACCAATGCCACCGGCAGATTTACTGATGAGGGCACACTG 38475 Query 119348 CGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGC 119406 ||||| || | ||||| || || |||||||| |||| |||||| | |||||| || | Sbjct 38474 TTTGAGAGTGTCATAGATACCGTCTATCGAGTCTTCCTTCATTTGC-ACGAGGAAACAAC 38416 Query 119407 TCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACA 119466 | ||||| ||||| |||||||||| | ||| ||||| || || || |||||| | || | Sbjct 38415 TTGACATCTGAGGGTTGGGTGTACCCGAGTTAAAGAGGGTGGGGGTGGCGTGGGTAAAGA 38356 Query 119467 TACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATAC 119526 |||| | ||||||||||| | ||||| | || || ||||| || | Sbjct 38355 GCTTTTGGCTGAGGAGATCGTAGGTCTCGAGAGCGGCGTCCAAATCGTCGCCGTGGATGC 38296 Query 119527 CGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCT 119586 | | |||||| ||||| ||||||| |||||| || || | |||| || || | Sbjct 38295 CCAACGAGACACGCATTAACATGTGTTGGGGACGCTCAATGATCTGGCCATTGACTCTTT 38236 Query 119587 GGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAA------ATAGCCAAAATC 119632 | | |||||| |||| | ||||||| ||||| |||| ||||||| Sbjct 38235 GCAAGTAACTTCTCTCGAGTGTCTTGAAGCCAAAGAAATCATAGTCAAAATC 38184 >seq171 Length=42127 Score = 87.8 bits (96), Expect = 2e-12 Identities = 170/248 (69%), Gaps = 5/248 (2%) Strand=Plus/Minus Query 14148 TATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCG 14207 || |||| |||||||| ||| ||| | |||||| | || | ||| | |||||| || Sbjct 37437 TAGCAAAACCATCCATTTCAACCAACAATTGATTCAAAGTGTTTTCTCTTTCATCGTTGC 37378 Query 14208 ---CAGGCATACCACCCGCACTGCGTTGCT-TACCGACGGCGTCAATTTCATCGATGAAA 14263 ||| | ||||||| | | ||||| |||| | ||| |||||||||||||| || Sbjct 37377 TACCAGAGAAACCACCCTTGCCTC-TTGCTCTACCAATGGCATCAATTTCATCGATAAAC 37319 Query 14264 ACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCG 14323 || ||||||||| ||| | || |||||| | ||| || ||||| | ||| Sbjct 37318 ACAATACATGGTGCATTCTTTTTAGCTTGTTCAAATAGATCACGTACTCTAGCTGGACCT 37259 Query 14324 ACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGAT 14383 ||||| ||| |||| || ||||||| | | ||| | | ||| || ||||| | | Sbjct 37258 ACACCAACATACATTTCAACAAAATCTGATCCAGAAGTTGAAAAGAATGGTACGTTTGCT 37199 Query 14384 TCACCCGC 14391 ||||| || Sbjct 37198 TCACCTGC 37191 >seq697 Length=10231 Score = 86.0 bits (94), Expect = 8e-12 Identities = 165/243 (68%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||||||||||||||| |||||| || || ||||| || ||| ||||| | ||| Sbjct 5931 GTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTCAAACCGGGCATCAAACC 5872 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || ||||| | ||| || || | ||||| ||| ||| ||||| ||||| || Sbjct 5871 ACGTTTCTTGAGCCAAAAGATAGAGCAAAAACTGCCGCTGAAAAAGATACCCTCGACGGC 5812 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 || || |||| | ||| || ||||| || | || || | ||| ||| || Sbjct 5811 GGCAAAGGCAACTAAACGTTCGGCAAATGATTTGCTGTTGGT---GATCCATCTCAATGC 5755 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266 ||| | ||||| || | | ||| |||| ||||| ||| || | || |||| |||| Sbjct 5754 CCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGATGGCGTTGAATAGTTTGCTCTT 5695 Query 130267 TTC 130269 ||| Sbjct 5694 TTC 5692 >seq269 Length=30927 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 7/198 (4%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || || ||||| || ||| | |||||||| ||| | ||| || |||||||| || Sbjct 29350 AAACCGTCCATTTCGACCAACAATTGATTGAGGGTGTTTTCACGCTCATCATTGT--GGA 29293 Query 14213 AT--ACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 || ||||| | || | ||||||||| |||||||||||||| || || ||| Sbjct 29292 ATCCACCACGTGAACGAGCACG---ACCGACGGCATCAATTTCATCGATAAATACAATAG 29236 Query 14271 ATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 |||| ||||| | ||| ||| ||||| ||||| || | ||| ||| ||||| | Sbjct 29235 CTGGTGCGTTTTCTCTGGCCTCTTTAAAGAGATCTCTTACACGACTGGGACCAACACCGA 29176 Query 14331 CAAACATCTCCACAAAAT 14348 |||||||||| | |||| Sbjct 29175 CAAACATCTCGATGAAAT 29158 >seq98 Length=57420 Score = 82.4 bits (90), Expect = 9e-11 Identities = 218/331 (66%), Gaps = 13/331 (4%) Strand=Plus/Minus Query 179740 AGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATCG 179799 || |||||||| |||| ||| || | ||| | | ||||| ||||| |||||||||||| Sbjct 16119 AGTGATGGCCAAAAGTGGTGAATAAAATTAATCAAAAGACCTTTAATATGTGAACCATCG 16060 Query 179800 TTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCG--GAAAC-------A 179850 | ||| ||| ||||| || | | ||||| ||||| ||| | || | Sbjct 16059 TGATCTTGATCAGTCATGATTAATATTTTTCCATAACGAAGTTCGTTTAGACTCTCTTGA 16000 Query 179851 TCTTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGG 179910 ||||||||| ||| ||||| || || | ||| | | || |||| ||||| | Sbjct 15999 TCTTGATAAGTCTTTTTGTGTTGTAGGCCAAGGATGGCTATCAAATTGTTGATCTCTTCG 15940 Query 179911 TTTG--ATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAG 179968 |||| ||| | ||| | | | ||| |||||||| | || ||||| |||| Sbjct 15939 TTTGCCATGAGGGTTTTGGGATT--TTGATCACGGACATTCAACAATTTACCACGTAGAG 15882 Query 179969 GGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCG 180028 |||| ||||| || | | ||||| ||| ||||||||| || || | | || | Sbjct 15881 GGAAAACACCATAACTGTTTCTTCCAACAACACTGAGACCAGCGACAGCCAAAGATTTTG 15822 Query 180029 CGGAATCACCCTCCGTCACGATGAGCGTACA 180059 | |||||||| || || | || || ||||| Sbjct 15821 CAGAATCACCTTCAGTTATAATTAGAGTACA 15791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618425707019680