Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 246 4e-60 seq171 104 3e-17 seq269 89.7 6e-13 seq697 86.0 7e-12 >seq2 Length=160969 Score = 246 bits (272), Expect = 4e-60 Identities = 1196/1872 (64%), Gaps = 79/1872 (4%) Strand=Plus/Plus Query 104124 ACATTGACACGAAGAGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGA 104183 |||||||| |||||||| | |||| || || ||||| |||| || || |||| | Sbjct 38167 ACATTGACTACAAGAGAGATTTTGACTATGATTTCTTTGGCTTCAAGACACTCGAGAGAA 38226 Query 104184 GCTATCTTCAACGGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCG 104243 | || | ||| | || |||| | || || || || ||||||| ||||| | Sbjct 38227 GTTACTTGCAAAGAGTCAATGGCCAGATCATTGAGCGTCCCCAACACATGTTAATGCGTG 38286 Query 104244 TGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGT 104303 | | | || || || || || || | || | | | ||||| ||||| | Sbjct 38287 TCTCGTTGGGCATCCACGGCGACGATTTGGACGCCGCTCTCGAGACCTACGATCTCCTCA 38346 Query 104304 CCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCC 104363 |||| | || | ||||| || || |||||||| || | |||||||| | || | Sbjct 38347 GCCAAAAGCTCTTTACCCACGCCACCCCCACCCTCTTTAACTCGGGTACACCCAACCCTC 38406 Query 104364 AAATGTCCAGTTGCTTCCTTATCGCCAAC-AAGGAGGACTCAATCAACGGTATCTATGGA 104422 | ||||| ||||| ||||| | || || ||||| ||||| || |||||||||||| Sbjct 38407 AGATGTCAAGTTGTTTCCTCGT-GCAAATGAAGGAAGACTCGATAGACGGTATCTATGAC 38465 Query 104423 ACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGAT-GCACATC-C 104480 ||||| | ||||||| | ||| || | || || || ||||| || || || | Sbjct 38466 ACTCTCAAACAGTGTGCCCTCATCAGTAAATCTGCCGGTGGCATTGGTATCGCCTGTCAC 38525 Query 104481 ATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTA 104540 | || | ||||||| | | ||| || || || || || ||| | |||||| Sbjct 38526 AAGA--TCAGAGCCAGCAGCAGTTATATCCGTGGCACCAACGGCACATCCAACGGTATTG 38583 Query 104541 TTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAA---GCTGGGCGTC 104597 | || |||||||| || ||||| | ||| || | || || | ||| | ||| Sbjct 38584 TCCCCATGCTTCGTGTCTTTAATGACACTGCCAGATACGTCGACCAAGGCGGTGGCAAGA 38643 Query 104598 GAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTG 104657 ||||||| | | || ||||| | |||||||||||||| ||||| | ||||| | | Sbjct 38644 GAAAGGGTGCCTTTGCCGTCTACTTGGAGCCATGGCACGCCGATATTTTTGAGTTTATCG 38703 Query 104658 AGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCT 104717 | ||| ||||| || | ||||| | | | | || ||||| | ||| |||| Sbjct 38704 ATTTGAAAAAGAACCACGGCAAAGAGGAAATGAGAGCCAGAGACCTCTTTTACGCCCTCT 38763 Query 104718 GGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTC 104777 || | || ||||| ||| | ||||| ||| | | | | ||||||| |||||||||| Sbjct 38764 GGGTCAGTGACCTCTTTATGGAAAGAGTCGAGCAAAACGCCGATTGGTCCCTCTTTTGTC 38823 Query 104778 CAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTT-GAAGCCCTTTACAC 104835 | || | || ||||| | |||| |||| | | || |||||| ||| | | | | Sbjct 38824 CCAACGAAGCCCCTGGCTTGGCCGAGTGCCAT-AGCGAAGAGTTTAGAAAACTCTATCTC 38882 Query 104836 AAAGTACGAGG---AAGAAGGTCGGGCGACTGCG-ACGGTGCCAGCTGCCGATGTGTGGA 104891 || ||||| | | || || || | ||| | | ||| || | ||| Sbjct 38883 CAA-TACGAAGCCACACCAGATCTTGCCA-AGCGTGTGATCAAAGCCCAAGACCTCTGGT 38940 Query 104892 AAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCT 104951 || |||||| | | |||| ||| |||||||| |||| ||| || |||||||| |||| Sbjct 38941 TTGCCATTCTCGAAGCCCAAATCGAAACTGGTACCCCATTCATCCTCTACAAAGATGCCT 39000 Query 104952 GTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAG 105011 | || ||| |||||| | || | || || || ||| || || |||| Sbjct 39001 GCAATTCAAAATCCAATCAACAAAACCTTGGCACCATTTCCAGCAGCAACCTTTGCACAG 39060 Query 105012 AAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTC 105071 ||||| | ||| || ||| || ||| || || || | || || || ||| Sbjct 39061 AAATCGTCCAATACACCTCGCCAGAGGAAGTGGCCGTTTGCAATTTGGCCTCTATTGCTT 39120 Query 105072 TCCCCAAGTATGT-------------GGATCCAGAGAC--------AAAGACATTTGATT 105110 | ||||| ||||| || |||| || |||| || ||| Sbjct 39121 TGCCCAAATATGTTGTCCAAAAACAAGGTTCCACCAACCCCAAAGAAAAGGAATATGACC 39180 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 || || | ||| | || || || || ||||||| || || |||| | ||||| | Sbjct 39181 ATCAACATCTCTATGAGGTAACCAAGGTAATCACCAAGAATCTCAACAAGATCATTGACA 39240 Query 105171 GAAATTTTTACCCCGTTGAGACTG-CTCGTAAA----TCTAATATGAGACACCGTCCAAT 105225 |||| | || || || | | | || ||| || || ||||||||| | || || Sbjct 39241 GAAACTACTATCCAGT---GCCCGAATC--AAAGGTGTCCAACATGAGACACAGACCCAT 39295 Query 105226 TGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGA 105282 |||||| || | || |||||||| ||||| || || ||| || | | ||||| Sbjct 39296 TGGTCTTGGCATCCAAGGTCTCGCCGATGTCTTTATCGCCCTTCGTTTAC---CTTTTGA 39352 Query 105283 ---TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATT--TGAGACCATGTATCACGCC 105337 | | | || || | | ||||| || | | ||| || ||||| ||| ||| Sbjct 39353 CTCTACTGGCGCTGCCA---CACTCAAT-CGTG-AGATTGCCGAAACCATCTATTTTGCC 39407 Query 105338 GCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 105397 ||||| || | |||||||| | | | ||| | |||||||||||||| || Sbjct 39408 GCTCTCACAGCCTCTAATGAGTTGGCTGCTGCCCACGGTGCCTATGAAACCTTTGAAGGC 39467 Query 105398 TCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGAC-CAAGCTTCA 105456 || ||||| || | || | || |||| ||| |||||| |||| || | | || || Sbjct 39468 TCACCAGCCTCTAAGGGTATCCTCCAATATGACATGTGG---GGTGTCACTCCATCTCCA 39524 Query 105457 C--TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTC 105514 | | ||||||| ||||||||| ||||||| | |||||| | |||||||| Sbjct 39525 CGTTGGGACTGGGCCAAACTCAAGGAAAAGATCAAGGCCACCGGTCTTAGAAACAGTCTT 39584 Query 105515 CTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 105574 | || || ||||||||||| ||| |||| | ||||| | || || ||||| |||||| Sbjct 39585 TTGATTGCCCCAATGCCAACCGCCAGCACCTCTCAAATTCTCGGAAACAATGAGTGCTTT 39644 Query 105575 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 105634 || || ||||| | ||||| || | | | || || || || ||||| Sbjct 39645 GAGCCATACACATCCAACATTTACAGTCGTCGTGTGTTGGCCGGTGAATTCACCATTGTA 39704 Query 105635 AACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGT--CCAAGGAT-ATGAAG 105691 || || || ||| | || |||| ||| ||||||| |||| ||| ||| | ||| Sbjct 39705 AATAAACAACTCCTCACCGATCTCATGGAGCTTGGTCTATGGTCGCCAGAGATCAAGAAC 39764 Query 105692 GATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATT 105751 | |||| | | || || || ||| |||||| ||| || || | || | Sbjct 39765 CAAATCATTCTCCACAGAGGCAGT---ATCCAAGATATTGAGGAAATCCCCGACGATCTC 39821 Query 105752 AAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA-TGTCATTGACATGGCCGC 105810 || || | ||| ||||| |||||||| | ||| | |||||||||||||||| Sbjct 39822 AAAGAGCTCTACAAAACAGTCTGGGAAAT-TCGTCAAAGAACCCTCATTGACATGGCCGC 39880 Query 105811 AGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAAC 105870 || |||||| ||| ||||| ||||| || || | ||| |||| || | || || Sbjct 39881 CGAGCGTGGTGCCTTTATTGACCAAAGCCAGAGCTTCAATGTCTTTATTGCTGAGCCCAC 39940 Query 105871 GATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGAT 105930 | ||||| ||| | || |||||| | ||| ||||| ||||||||||| || || || Sbjct 39941 CTTTTCCAAACTCACATCGATGCACTTTTACTCCTGGAAAAAGGGTCTCAAGACCGGTAT 40000 Query 105931 GTATTACCTCCG 105942 ||| || ||||| Sbjct 40001 GTACTATCTCCG 40012 >seq171 Length=42127 Score = 104 bits (114), Expect = 3e-17 Identities = 251/371 (68%), Gaps = 13/371 (4%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | ||| |||||||| | || | ||| | ||||| | ||| || ||||| Sbjct 37520 ATCAAATCTACCGGGACGAAGTAAGGCTTGATCCAAAATATCTGGTCTATTGGTGGCGGC 37461 Query 9586 GATGACAACAATACCTGTTTCATTAT--CAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | || || ||| | ||| | | | ||||||||||||| || ||| | ||| || Sbjct 37460 AAACACTAC--TACGTCTTTGAGTGTAGCAAAACCATCCATTTCAACCAACAATTGATTC 37403 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATA-CCACCAGCACTGC--GTTGCT-TTCC 9699 | ||| | ||| | |||||| || ||| || | |||| | ||| ||||| | || Sbjct 37402 AAAGTGTTTTCTCTTTCATCGTT-GCTACCAGAGAAACCACCCTTGCCTCTTGCTCTACC 37344 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 9759 | ||||||||| ||||| || || || || |||||| ||| | ||| |||||| Sbjct 37343 AATGGCATCAATTTCATCGATAAACACAATACATGGTGCATTCTTTTTAGCTTGTTCAAA 37284 Query 9760 GAGATCCCGTACAC--GCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 ||||| ||||| | ||| | || ||||||||| |||| || ||||| | || | Sbjct 37283 TAGATCACGTACTCTAGCT--GGACCTACACCAACATACATTTCAACAAAATCTGATCCA 37226 Query 9818 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 ||| | | ||| || || || | |||||| ||| | ||| || | | ||| ||| Sbjct 37225 GAAGTTGAAAAGAATGGTACGTTTGCTTCACCTGCAGTTGCTTTTGCTAATAAAGTTTTA 37166 Query 9878 CCCGTACCTGG 9888 || |||||||| Sbjct 37165 CCTGTACCTGG 37155 >seq269 Length=30927 Score = 89.7 bits (98), Expect = 6e-13 Identities = 214/318 (67%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 9757 || ||||||||||| ||||| || || || || |||| ||||| | || ||| | Sbjct 29269 CCGACGGCATCAATTTCATCGATAAATACAATAGCTGGTGCGTTTTCTCTGGCCTCTTTA 29210 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGG 9815 |||||||| | |||||| ||| || ||||| ||||||||||| | || | || | Sbjct 29209 AAGAGATCTCTTACACGACTGGGACCAACACCGACAAACATCTCGATGAAATCTGAACCA 29150 Query 9816 CGGAACATTGGAT-GAAGGGGACATTAGATTCACCCGCAATGG-CTCGGGCGAGAAGAGT 9873 | | |||| || ||| ||||| | ||||| ||| ||| || || | | ||| || Sbjct 29149 CTG---ATTGTATAAAAGTTTACATTGGCCTCACCAGCAGTGGCCTTGGCCAACAAG-GT 29094 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCC 9933 |||||| || ||||| ||| | | || |||||| || ||||| || ||| || Sbjct 29093 CTTACCAGTGCCTGGGGGACCAACCAAGATGGCACCCTTGGGGATCTTTGCACCAAGTCT 29034 Query 9934 AAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGC 9993 |||| |||| || | ||| || || |||| ||| | || |||||||| | Sbjct 29033 CTTGTATTTCTCTGGATTCTTGAGGAATGAAACAAATTCCATAATCTCTTCTTTGGCCTC 28974 Query 9994 GTCAATCCCCTCAACATC 10011 || || || ||||||| Sbjct 28973 CTCCATACCGGCAACATC 28956 >seq697 Length=10231 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || ||||| || || | | || ||||| || ||||||||||| ||| || Sbjct 5782 TCATTTGCCGAACGTTTAGTTGCCTTTGCCGCCGTCGAGGGTATCTTTTTCAGCGGCAGT 5841 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || ||| |||| | |||||||||||| || ||| | ||||| ||| | ||||| ||| Sbjct 5842 TTTTGCTCTATCTTTTGGCTCAAGAAACGTGGTTTGATGCCCGGTTTGACATTCTCTAAC 5901 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||| |||||||||||| |||||| Sbjct 5902 GAGCTCATCAGTCGTGACGAGGGTCTCCAC 5931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583251846946720